Streptopelia decaocto

Eurasian collared-dove

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bStrDea
  name: Streptopelia decaocto
  taxon_id: 177147
  common_name: Eurasian collared-dove
  order:
    name: Columbiformes
  family:
    name: Columbidae
  individuals:
    - short_name: bStrDea1
      biosample_id: SAMEA113398962
      sex: male
  genome_size: 1290960000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bStrDea1 58.19 Gbp 45.08x 15.9 GiB
Arima bStrDea1 118.27 Gbp 91.61x 32.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.29 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bStrDea1 PacBio HiFi (.bam) 58.19 Gbp 45.08x 15.9 GiB
Arima 118.27 Gbp 91.61x 32.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.29 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 8 March 2024
bStrDea1.hap1.asm.20240308.fasta.gz (310.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.32 Mbp 1 212.76 Mbp
20 33 5.44 Mbp 2 157.62 Mbp
30 60 4.26 Mbp 3 121.58 Mbp
40 93 3.46 Mbp 4 81.86 Mbp
50 137 2.43 Mbp 5 77.55 Mbp
60 197 1.87 Mbp 7 68.85 Mbp
70 280 1.32 Mbp 10 22.06 Mbp
80 398 0.90 Mbp 18 12.37 Mbp
90 639 275.08 Kbp 90 452.37 Kbp
100 3033 12.29 Kbp 2364 13.16 Kbp
1.001x 3149 1.29 Gbp 2491 1.29 Gbp
NG based on genome size 1.29 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 8 March 2024
bStrDea1.hap2.asm.20240308.fasta.gz (302.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 7.39 Mbp 1 213.43 Mbp
20 36 5.31 Mbp 2 162.36 Mbp
30 64 4.09 Mbp 3 120.45 Mbp
40 100 3.25 Mbp 4 82.31 Mbp
50 145 2.53 Mbp 5 77.99 Mbp
60 203 1.89 Mbp 7 69.28 Mbp
70 283 1.39 Mbp 10 22.37 Mbp
80 397 0.89 Mbp 17 12.59 Mbp
90 660 211.68 Kbp 86 388.45 Kbp
100 0 0
0.930x 1273 1.20 Gbp 611 1.20 Gbp
NG based on genome size 1.29 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
bStrDea1.MT.20240308.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.