Rousettus aegyptiacus

Egyptian fruit bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mRouAeg1: GCA_014176215.1
ENA mRouAeg1: GCA_014176215.1
UCSC Genome Browser mRouAeg1: GCA_014176215.1

metadata.yaml (view) (edit on github)
species:
  common_name: Egyptian fruit bat
  family:
    name: Pteropodidae
  genome_size: 2109999999
  genome_size_method: null
  individuals:
  - short_name: mRouAeg1
  name: Rousettus aegyptiacus
  order:
    name: Chiroptera
  short_name: mRouAeg
  taxon_id: 9407
  project: [ vgp ]
CC BY-SA 3.0 Вых Пыхманн (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mRouAeg1 122.36 Gbp 57.99x 217.0 GiB
10x mRouAeg1 112.49 Gbp 53.31x 56.1 GiB
Bionano mRouAeg1 N/A 725.93x 1.0 GiB
Arima mRouAeg1 22.84 Gbp 10.82x 14.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.11 Gbp.
Last upload on 23 February 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRouAeg1 PacBio CLR 122.36 Gbp 57.99x 217.0 GiB
10x 112.49 Gbp 53.31x 56.1 GiB
Bionano N/A 725.93x 1.0 GiB
Arima 22.84 Gbp 10.82x 14.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.11 Gbp.
Last upload on 23 February 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 27 April 2019
mRouAeg1.pri.asm.20190427.fasta.gz (598.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 59.73 Mbp 1 177.60 Mbp
20 7 41.71 Mbp 2 173.79 Mbp
30 12 31.55 Mbp 3 160.59 Mbp
40 20 24.21 Mbp 5 115.50 Mbp
50 30 18.63 Mbp 7 112.74 Mbp
60 43 13.65 Mbp 8 106.50 Mbp
70 63 8.03 Mbp 11 94.23 Mbp
80 100 4.03 Mbp 13 61.85 Mbp
90 0 0
100 0 0
0.885x 271 1.87 Gbp 29 1.89 Gbp
NG based on genome size 2.11 Gbp.
Individual 1 Alternate Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
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40 - - - -
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90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.