Pseudorca crassidens

false killer whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  name: Pseudorca crassidens
  individuals:
  - short_name: mPseCra1
  short_name: mPseCra
  taxon_id: 82174
  common_name: false killer whale
  genome_size: 3081000000
  genome_size_method: GoAT
  order:
    name: Artiodactyla
  family:
    name: Delphinidae
  project: [ vgp ]
CC BY 2.0 NOAA/NMFS/PIFSC by Jim Cotton (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mPseCra1 382.18 Gbp 124.04x 0.9 TiB
PacBio HiFi (.fq) mPseCra1 116.44 Gbp 37.79x 93.8 GiB
PacBio HiFi (.bam) mPseCra1 116.99 Gbp 37.97x 403.2 GiB
Bionano mPseCra1 N/A 270.84x 1.7 GiB
Dovetail Genomics mPseCra1 321.42 Gbp 104.32x 165.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 23 January 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPseCra1 PacBio HiFi (subreads) 382.18 Gbp 124.04x 0.9 TiB
PacBio HiFi (.fq) 116.44 Gbp 37.79x 93.8 GiB
PacBio HiFi (.bam) 116.99 Gbp 37.97x 403.2 GiB
Bionano N/A 270.84x 1.7 GiB
Dovetail Genomics 321.42 Gbp 104.32x 165.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 23 January 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 26 February 2024
mPseCra1.HiC.hap1.20240226.fasta.gz (675.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 149.43 Mbp 1 356.50 Mbp
20 5 92.04 Mbp 3 186.66 Mbp
30 9 80.72 Mbp 5 116.59 Mbp
40 13 61.09 Mbp 8 105.41 Mbp
50 19 49.46 Mbp 11 92.19 Mbp
60 27 31.37 Mbp 14 87.44 Mbp
70 39 19.35 Mbp 18 62.71 Mbp
80 179 390.68 Kbp 43 2.08 Mbp
90 0 0
100 0 0
0.813x 526 2.50 Gbp 459 2.59 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 26 February 2024
mPseCra1.HiC.hap2.20240226.fasta.gz (731.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 110.51 Mbp 2 198.34 Mbp
20 6 104.79 Mbp 3 165.21 Mbp
30 9 91.99 Mbp 5 151.28 Mbp
40 13 62.03 Mbp 8 110.51 Mbp
50 18 44.58 Mbp 11 97.20 Mbp
60 26 32.53 Mbp 14 89.58 Mbp
70 37 25.14 Mbp 18 65.70 Mbp
80 61 5.63 Mbp 23 36.76 Mbp
90 223 0.55 Mbp 79 2.16 Mbp
100 0 0
0.919x 569 2.83 Gbp 457 2.92 Gbp
NG based on genome size 3.08 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.