Podarcis pityusensis

Ibiza wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodPit
  name: Podarcis pityusensis
  taxon_id: 74359
  common_name: Ibiza wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodPit1
      biosample_id: SAMEA114217797
      sex: female
  genome_size: 2640600000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodPit1 85.42 Gbp 32.35x 28.0 GiB
Arima rPodPit1 553.94 Gbp 209.78x 152.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.64 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodPit1 PacBio HiFi (.bam) 85.42 Gbp 32.35x 28.0 GiB
Arima 553.94 Gbp 209.78x 152.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.64 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 1 March 2024
rPodPit1.hap1.asm.20240301.fasta.gz (443.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 60 3.21 Mbp 3 120.81 Mbp
20 160 2.25 Mbp 5 100.10 Mbp
30 303 1.55 Mbp 8 89.11 Mbp
40 511 1.01 Mbp 11 64.35 Mbp
50 864 0.52 Mbp 16 43.28 Mbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.578x 2574 1.53 Gbp 1139 1.53 Gbp
NG based on genome size 2.64 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 1 March 2024
rPodPit1.hap2.asm.20240301.fasta.gz (423.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 56 3.43 Mbp 2 125.65 Mbp
20 151 2.27 Mbp 5 98.87 Mbp
30 293 1.51 Mbp 8 88.05 Mbp
40 504 0.99 Mbp 11 63.86 Mbp
50 896 432.30 Kbp 16 42.68 Mbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.550x 1690 1.45 Gbp 358 1.45 Gbp
NG based on genome size 2.64 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 March 2024
rPodPit1.MT.20240301.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.