Platalea leucorodia

Eurasian spoonbill

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bPlaLeu
  name: Platalea leucorodia
  taxon_id: 257867
  common_name: Eurasian spoonbill
  order:
    name: Pelecaniformes
  family:
    name: Threskiornithidae
  individuals:
    - short_name: bPlaLeu2
      biosample_id: SAMEA112468120
      sex: female
  genome_size: 1222500000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bPlaLeu2 41.35 Gbp 33.82x 25.1 GiB
Arima bPlaLeu2 78.23 Gbp 64.00x 23.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 30 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPlaLeu2 PacBio HiFi (.bam) 41.35 Gbp 33.82x 25.1 GiB
Arima 78.23 Gbp 64.00x 23.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 30 November 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_cambridge from 2 December 2023
bPlaLeu2.pri.asm.20231202.fasta.gz (371.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 10.08 Mbp 1 169.45 Mbp
20 25 8.29 Mbp 2 133.64 Mbp
30 41 6.94 Mbp 3 128.24 Mbp
40 60 5.71 Mbp 4 115.50 Mbp
50 85 4.48 Mbp 5 106.97 Mbp
60 115 3.66 Mbp 6 102.49 Mbp
70 153 2.92 Mbp 8 74.41 Mbp
80 201 2.22 Mbp 10 52.47 Mbp
90 267 1.48 Mbp 14 14.84 Mbp
100 388 0.59 Mbp 26 4.26 Mbp
1.048x 831 1.28 Gbp 363 1.28 Gbp
NG based on genome size 1.22 Gbp.
Individual 2 Alternate Assembly
Version assembly_cambridge from 2 December 2023
bPlaLeu2.alt.asm.20231202.fasta.gz (356.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 42 2.17 Mbp 42 2.17 Mbp
20 114 1.42 Mbp 114 1.42 Mbp
30 212 1.11 Mbp 212 1.11 Mbp
40 336 0.89 Mbp 336 0.89 Mbp
50 490 0.73 Mbp 490 0.73 Mbp
60 677 0.59 Mbp 677 0.59 Mbp
70 911 440.36 Kbp 911 440.36 Kbp
80 1241 309.38 Kbp 1241 309.38 Kbp
90 1763 173.12 Kbp 1763 173.12 Kbp
100 3297 33.29 Kbp 3297 33.29 Kbp
1.029x 5155 1.26 Gbp 5155 1.26 Gbp
NG based on genome size 1.22 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 December 2023
bPlaLeu2.MT.20231202.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.