Netta rufina

red-crested pochard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bNetRuf
  name: Netta rufina
  taxon_id: 30387
  common_name: red-crested pochard
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bNetRuf1
      biosample_id: SAMEA112468124
      sex: female
  genome_size: 1349640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bNetRuf1 33.27 Gbp 24.65x 22.8 GiB
Arima bNetRuf1 106.79 Gbp 79.13x 34.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 13 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bNetRuf1 PacBio HiFi (.bam) 33.27 Gbp 24.65x 22.8 GiB
Arima 106.79 Gbp 79.13x 34.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 13 January 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 15 January 2024
bNetRuf1.pri.asm.20240115.fasta.gz (339.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 7.80 Mbp 1 207.13 Mbp
20 34 5.52 Mbp 2 158.20 Mbp
30 60 4.64 Mbp 3 120.02 Mbp
40 94 3.57 Mbp 4 83.77 Mbp
50 136 2.95 Mbp 6 65.35 Mbp
60 190 2.06 Mbp 9 33.15 Mbp
70 275 1.30 Mbp 15 21.71 Mbp
80 419 0.64 Mbp 24 7.57 Mbp
90 0 0
100 0 0
0.866x 863 1.17 Gbp 208 1.17 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 15 January 2024
bNetRuf1.alt.asm.20240115.fasta.gz (277.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 2.89 Mbp 35 2.89 Mbp
20 93 1.95 Mbp 93 1.95 Mbp
30 179 1.29 Mbp 179 1.29 Mbp
40 301 0.95 Mbp 301 0.95 Mbp
50 481 0.60 Mbp 481 0.60 Mbp
60 778 323.32 Kbp 778 323.32 Kbp
70 2049 29.10 Kbp 2049 29.10 Kbp
80 0 0
90 0 0
100 0 0
0.717x 3220 0.97 Gbp 3220 0.97 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 January 2024
bNetRuf1.MT.20240115.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.