Neovison vison

American mink

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mNeoVis
  name: Neovison vison
  taxon_id: 452646
  common_name: American mink
  order:
    name: Carnivora
  family:
    name: Mustelidae
  individuals:
    - short_name: mNeoVis2
      biosample_id: SAMEA112468126
      sex: female
  genome_size: 2880210000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mNeoVis2 134.33 Gbp 46.64x 55.0 GiB
Arima mNeoVis2 391.26 Gbp 135.85x 107.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 18 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mNeoVis2 PacBio HiFi (.bam) 134.33 Gbp 46.64x 55.0 GiB
Arima 391.26 Gbp 135.85x 107.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 18 March 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 20 March 2024
mNeoVis2.hap1.asm.20240320.fasta.gz (696.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 63 3.53 Mbp 1 314.97 Mbp
20 160 2.67 Mbp 3 221.81 Mbp
30 284 2.09 Mbp 4 220.61 Mbp
40 439 1.65 Mbp 5 210.14 Mbp
50 633 1.36 Mbp 7 145.14 Mbp
60 872 1.06 Mbp 9 129.18 Mbp
70 1183 0.80 Mbp 12 106.10 Mbp
80 1616 0.54 Mbp 15 74.21 Mbp
90 2371 232.59 Kbp 32 1.56 Mbp
100 0 0
0.940x 4121 2.71 Gbp 1294 2.71 Gbp
NG based on genome size 2.88 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 20 March 2024
mNeoVis2.hap2.asm.20240320.fasta.gz (687.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 66 3.41 Mbp 1 306.41 Mbp
20 164 2.59 Mbp 3 216.64 Mbp
30 290 2.06 Mbp 4 208.98 Mbp
40 449 1.63 Mbp 5 197.13 Mbp
50 643 1.37 Mbp 7 145.87 Mbp
60 879 1.08 Mbp 10 118.62 Mbp
70 1186 0.81 Mbp 12 109.67 Mbp
80 1616 0.55 Mbp 15 87.96 Mbp
90 2404 202.45 Kbp 54 1.07 Mbp
100 0 0
0.927x 3291 2.67 Gbp 551 2.67 Gbp
NG based on genome size 2.88 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 March 2024
mNeoVis2.MT.20240320.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.