Nansenia antarctica

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fNanAnt
  name: Nansenia antarctica
  taxon_id: 443705
  common_name:
  order:
    name: Argentiniformes
  family:
    name: Microstomatidae
  individuals:
    - short_name: fNanAnt1
      biosample_id: SAMEA8748805
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-NC 3.0 U.N. FAO (FishBase)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fNanAnt1 63.34 Gbp 57.80x 135.5 GiB
Arima fNanAnt1 252.13 Gbp 230.08x 117.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.10 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fNanAnt1 PacBio HiFi (.bam) 63.34 Gbp 57.80x 135.5 GiB
Arima 252.13 Gbp 230.08x 117.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.10 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 3 August 2023
fNanAnt1.pri.asm.20230803.fasta.gz (288.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 2.41 Mbp 1 110.94 Mbp
20 89 1.76 Mbp 3 77.90 Mbp
30 161 1.25 Mbp 4 76.87 Mbp
40 261 0.97 Mbp 6 71.09 Mbp
50 391 0.75 Mbp 7 56.11 Mbp
60 567 0.52 Mbp 10 37.35 Mbp
70 819 363.54 Kbp 13 32.16 Mbp
80 1201 226.09 Kbp 17 25.68 Mbp
90 1891 108.58 Kbp 36 1.56 Mbp
100 4541 1.00 Kbp 1307 1.00 Kbp
1.000x 4541 1.10 Gbp 1307 1.10 Gbp
NG based on genome size 1.10 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 3 August 2023
fNanAnt1.alt.asm.20230803.fasta.gz (242.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 77 0.94 Mbp 77 0.94 Mbp
20 212 0.61 Mbp 212 0.61 Mbp
30 404 441.44 Kbp 404 441.44 Kbp
40 672 321.10 Kbp 672 321.10 Kbp
50 1034 235.75 Kbp 1034 235.75 Kbp
60 1540 166.67 Kbp 1540 166.67 Kbp
70 2262 114.34 Kbp 2262 114.34 Kbp
80 3351 73.13 Kbp 3351 73.13 Kbp
90 5138 42.55 Kbp 5138 42.55 Kbp
100 8904 2.60 Kbp 8904 2.60 Kbp
1.000x 8904 1.00 Gbp 8904 1.00 Gbp
NG based on genome size 1.10 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 3 August 2023
fNanAnt1.MT.20230803.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.