Myxine glutinosa

Atlantic hagfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kmMyxGlut
  name: Myxine glutinosa
  taxon_id: 7769
  common_name: Atlantic hagfish
  order:
    name: Myxiniformes
  family:
    name: Myxinidae
  individuals:
    - short_name: kmMyxGlut1
      biosample_id: SAMEA12790223
      sex:
  genome_size: 4195620000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kmMyxGlut1 163.33 Gbp 38.93x 96.1 GiB
Arima kmMyxGlut1 1738.48 Gbp 414.35x 552.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.20 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kmMyxGlut1 PacBio HiFi (.bam) 163.33 Gbp 38.93x 96.1 GiB
Arima 1738.48 Gbp 414.35x 552.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.20 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 14 November 2023
kmMyxGlut1.pri.asm.20231114.fasta.gz (756.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 199 1.62 Mbp 2 261.19 Mbp
20 508 1.17 Mbp 3 207.85 Mbp
30 920 0.89 Mbp 6 168.68 Mbp
40 1463 0.66 Mbp 9 112.04 Mbp
50 2225 461.00 Kbp 13 83.84 Mbp
60 3407 267.39 Kbp 48 1.95 Mbp
70 5991 91.48 Kbp 1834 91.71 Kbp
80 0 0
90 0 0
100 0 0
0.729x 8396 3.06 Gbp 4248 3.06 Gbp
NG based on genome size 4.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 14 November 2023
kmMyxGlut1.alt.asm.20231114.fasta.gz (630.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 708 419.95 Kbp 708 419.95 Kbp
20 1938 287.81 Kbp 1938 287.81 Kbp
30 3671 205.12 Kbp 3671 205.12 Kbp
40 6086 147.41 Kbp 6086 147.41 Kbp
50 9628 94.50 Kbp 9628 94.50 Kbp
60 15920 44.28 Kbp 15920 44.28 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.656x 24881 2.75 Gbp 24881 2.75 Gbp
NG based on genome size 4.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 November 2023
kmMyxGlut1.MT.20231114.fasta.gz (5.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.