Mesoplodon bidens

Sowerby's beaked whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMesBid
  name: Mesoplodon bidens
  taxon_id: 48745
  common_name: Sowerby's beaked whale
  order:
    name: Cetacea
  family:
    name: Hyperoodontidae
  individuals:
    - short_name: mMesBid2
      biosample_id: SAMEA112165298
      sex: male
  genome_size: 3217620000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMesBid2 156.16 Gbp 48.53x 56.9 GiB
Arima mMesBid2 1051.74 Gbp 326.87x 292.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMesBid2 PacBio HiFi (.bam) 156.16 Gbp 48.53x 56.9 GiB
Arima 1051.74 Gbp 326.87x 292.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 6 March 2024
mMesBid2.hap1.asm.20240306.fasta.gz (705.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 7.71 Mbp 2 187.10 Mbp
20 82 5.93 Mbp 4 175.36 Mbp
30 143 4.54 Mbp 6 112.06 Mbp
40 224 3.57 Mbp 9 104.13 Mbp
50 326 2.74 Mbp 12 90.18 Mbp
60 462 2.03 Mbp 16 77.84 Mbp
70 652 1.39 Mbp 23 14.95 Mbp
80 962 0.75 Mbp 129 1.47 Mbp
90 1926 106.00 Kbp 921 111.00 Kbp
100 0 0
0.914x 2825 2.94 Gbp 1804 2.94 Gbp
NG based on genome size 3.22 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 6 March 2024
mMesBid2.hap2.asm.20240306.fasta.gz (685.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 7.49 Mbp 2 185.71 Mbp
20 82 6.04 Mbp 4 154.40 Mbp
30 142 4.72 Mbp 6 111.84 Mbp
40 221 3.60 Mbp 9 98.41 Mbp
50 323 2.73 Mbp 13 87.59 Mbp
60 459 2.05 Mbp 17 62.93 Mbp
70 654 1.30 Mbp 25 18.62 Mbp
80 1012 0.60 Mbp 161 0.95 Mbp
90 0 0
100 0 0
0.875x 2179 2.82 Gbp 1195 2.82 Gbp
NG based on genome size 3.22 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 6 March 2024
mMesBid2.MT.20240306.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.