Leuciscus leuciscus

common dace

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fLeuLeu
  name: Leuciscus leuciscus
  taxon_id: 58325
  common_name: common dace
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fLeuLeu2
      biosample_id: SAMEA11296544
      sex:
  genome_size: 1207830000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLeuLeu2 46.70 Gbp 38.66x 29.3 GiB
Arima fLeuLeu2 100.40 Gbp 83.12x 29.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.21 Gbp.
Last upload on 31 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLeuLeu2 PacBio HiFi (.bam) 46.70 Gbp 38.66x 29.3 GiB
Arima 100.40 Gbp 83.12x 29.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.21 Gbp.
Last upload on 31 January 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 15 March 2024
fLeuLeu2.hap1.asm.20240315.fasta.gz (296.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 4.89 Mbp 2 65.89 Mbp
20 49 3.59 Mbp 4 54.76 Mbp
30 86 2.85 Mbp 7 46.55 Mbp
40 135 2.19 Mbp 9 43.09 Mbp
50 196 1.81 Mbp 12 41.72 Mbp
60 273 1.33 Mbp 15 38.72 Mbp
70 379 0.98 Mbp 18 35.91 Mbp
80 526 0.67 Mbp 22 34.23 Mbp
90 779 327.96 Kbp 29 3.53 Mbp
100 0 0
0.992x 2057 1.20 Gbp 1026 1.20 Gbp
NG based on genome size 1.21 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 15 March 2024
fLeuLeu2.hap2.asm.20240315.fasta.gz (297.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 4.49 Mbp 2 70.30 Mbp
20 53 3.35 Mbp 4 54.08 Mbp
30 93 2.73 Mbp 6 48.00 Mbp
40 143 2.17 Mbp 9 44.59 Mbp
50 206 1.70 Mbp 12 41.86 Mbp
60 287 1.33 Mbp 15 39.44 Mbp
70 390 1.04 Mbp 18 37.88 Mbp
80 533 0.70 Mbp 21 36.97 Mbp
90 765 385.00 Kbp 25 29.68 Mbp
100 0 0
0.990x 1695 1.20 Gbp 656 1.20 Gbp
NG based on genome size 1.21 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 March 2024
fLeuLeu2.MT.20240315.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.