Hypomesus transpacificus

delta smelt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  name: Hypomesus transpacificus
  individuals:
  - short_name: fHypTra1
  short_name: fHypTra
  taxon_id: 137520
  common_name: delta smelt
  genome_size: 724000000
  genome_size_method: GoAT
  order:
    name: Osmeriformes
  family:
    name: Osmeridae
  project: [ vgp ]
Public Domain (Piqsels)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
Bionano fHypTra1 N/A 763.15x 780.3 MiB
Arima fHypTra1 154.91 Gbp 213.97x 76.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.72 Gbp.
Last upload on 6 October 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fHypTra1 Bionano N/A 763.15x 780.3 MiB
Arima 154.91 Gbp 213.97x 76.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.72 Gbp.
Last upload on 6 October 2021.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 1 December 2022
fHypTra1.HiC.hap1.20221201.fasta.gz (148.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 1.76 Mbp 5 15.01 Mbp
20 93 0.84 Mbp 10 12.62 Mbp
30 215 471.81 Kbp 17 8.05 Mbp
40 418 274.05 Kbp 26 6.64 Mbp
50 779 154.90 Kbp 46 2.13 Mbp
60 1390 90.00 Kbp 117 457.85 Kbp
70 2592 40.18 Kbp 578 72.72 Kbp
80 0 0
90 0 0
100 0 0
0.787x 5225 0.57 Gbp 2920 0.57 Gbp
NG based on genome size 0.72 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 1 December 2022
fHypTra1.HiC.hap2.20221201.fasta.gz (124.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 1.35 Mbp 7 9.92 Mbp
20 116 0.63 Mbp 16 4.88 Mbp
30 275 342.38 Kbp 35 2.73 Mbp
40 572 173.65 Kbp 74 1.35 Mbp
50 1155 92.63 Kbp 190 305.96 Kbp
60 2343 40.14 Kbp 836 54.19 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.645x 3503 467.16 Mbp 1865 467.48 Mbp
NG based on genome size 0.72 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.