Electrona subaspera

rough lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fEleSub
  name: Electrona subaspera
  taxon_id: 948024
  common_name: rough lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fEleSub1
      biosample_id: SAMEA12815436
      sex: female
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fEleSub1 60.42 Gbp 31.68x 99.6 GiB
Arima fEleSub1 130.81 Gbp 68.59x 40.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 26 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEleSub1 PacBio HiFi (.bam) 60.42 Gbp 31.68x 99.6 GiB
Arima 130.81 Gbp 68.59x 40.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 26 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 26 June 2023
fEleSub1.pri.asm.20230626.fasta.gz (367.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 56 2.57 Mbp 3 60.72 Mbp
20 143 1.93 Mbp 6 60.09 Mbp
30 261 1.38 Mbp 10 56.37 Mbp
40 425 0.99 Mbp 13 51.47 Mbp
50 657 0.70 Mbp 17 49.67 Mbp
60 1006 426.94 Kbp 21 42.58 Mbp
70 1672 178.72 Kbp 70 0.98 Mbp
80 0 0
90 0 0
100 0 0
0.764x 3516 1.46 Gbp 1009 1.46 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 26 June 2023
fEleSub1.alt.asm.20230626.fasta.gz (306.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 129 1.01 Mbp 129 1.01 Mbp
20 382 0.59 Mbp 382 0.59 Mbp
30 782 386.80 Kbp 782 386.80 Kbp
40 1410 241.55 Kbp 1410 241.55 Kbp
50 2490 129.08 Kbp 2490 129.08 Kbp
60 5035 41.59 Kbp 5035 41.59 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.659x 9667 1.26 Gbp 9667 1.26 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 26 June 2023
fEleSub1.MT.20230626.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.