Cygnus columbianus

tundra swan

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bCygCol
  name: Cygnus columbianus
  taxon_id: 110926
  common_name: tundra swan
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bCygCol1
      biosample_id: SAMEA112468031
      sex: female
  genome_size: 1471890000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bCygCol1 61.01 Gbp 41.45x 22.5 GiB
Arima bCygCol1 90.70 Gbp 61.62x 29.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 14 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCygCol1 PacBio HiFi (.bam) 61.01 Gbp 41.45x 22.5 GiB
Arima 90.70 Gbp 61.62x 29.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 14 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 15 August 2023
bCygCol1.pri.asm.20230815.fasta.gz (347.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 10.90 Mbp 1 210.10 Mbp
20 29 7.27 Mbp 2 162.14 Mbp
30 52 5.46 Mbp 3 121.07 Mbp
40 82 4.20 Mbp 5 78.16 Mbp
50 122 3.33 Mbp 7 40.83 Mbp
60 174 2.38 Mbp 12 22.84 Mbp
70 255 1.35 Mbp 19 13.46 Mbp
80 419 0.56 Mbp 67 0.89 Mbp
90 0 0
100 0 0
0.870x 1095 1.28 Gbp 642 1.28 Gbp
NG based on genome size 1.47 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 15 August 2023
bCygCol1.alt.asm.20230815.fasta.gz (287.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 4.03 Mbp 28 4.03 Mbp
20 73 2.77 Mbp 73 2.77 Mbp
30 134 2.05 Mbp 134 2.05 Mbp
40 216 1.58 Mbp 216 1.58 Mbp
50 328 1.10 Mbp 328 1.10 Mbp
60 503 0.65 Mbp 503 0.65 Mbp
70 944 133.97 Kbp 944 133.97 Kbp
80 0 0
90 0 0
100 0 0
0.745x 2420 1.10 Gbp 2420 1.10 Gbp
NG based on genome size 1.47 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 August 2023
bCygCol1.MT.20230815.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.