Choloepus didactylus

southern two-toed sloth

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mChoDid1: GCA_015220235.1 mChoDid1: GCA_015220265.1
ENA mChoDid1: GCA_015220235.1 mChoDid1: GCA_015220265.1
UCSC Genome Browser mChoDid1: GCA_015220235.1 mChoDid1: GCA_015220265.1

metadata.yaml (view) (edit on github)
species:
  short_name: mChoDid
  name: Choloepus didactylus
  taxon_id: 27675
  common_name: southern two-toed sloth
  order:
    name: Folivora
  family:
    name: Megalonychidae
  individuals:
    - short_name: mChoDid1
  genome_size: 3400000000
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Hans Hillewaert (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mChoDid1 193.17 Gbp 56.81x 339.3 GiB
10x mChoDid1 342.78 Gbp 100.82x 159.9 GiB
Bionano mChoDid1 N/A 251.42x 1.5 GiB
Arima mChoDid1 297.29 Gbp 87.44x 153.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mChoDid1 PacBio CLR 193.17 Gbp 56.81x 339.3 GiB
10x 342.78 Gbp 100.82x 159.9 GiB
Bionano N/A 251.42x 1.5 GiB
Arima 297.29 Gbp 87.44x 153.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.pri.asm.20200914.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 6 49.21 Mbp 1 248.08 Mbp
20 13 38.79 Mbp 2 223.23 Mbp
30 23 32.32 Mbp 4 193.84 Mbp
40 35 24.60 Mbp 6 156.66 Mbp
50 51 19.04 Mbp 8 146.18 Mbp
60 75 10.92 Mbp 11 102.98 Mbp
70 117 5.42 Mbp 14 90.81 Mbp
80 215 2.09 Mbp 18 77.03 Mbp
90 642 282.53 Kbp 25 26.63 Mbp
100 0 0
0.922x 1385 3.13 Gbp 145 3.21 Gbp
NG based on genome size 3.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.alt.asm.20200914.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 171 1.57 Mbp 171 1.57 Mbp
20 431 1.13 Mbp 431 1.13 Mbp
30 782 0.85 Mbp 782 0.85 Mbp
40 1248 0.63 Mbp 1248 0.63 Mbp
50 1880 459.77 Kbp 1880 461.73 Kbp
60 2773 311.30 Kbp 2770 312.67 Kbp
70 4103 211.53 Kbp 4096 212.10 Kbp
80 6073 139.04 Kbp 6060 139.40 Kbp
90 9338 73.00 Kbp 9316 73.22 Kbp
100 0 0
0.935x 12050 3.18 Gbp 11980 3.18 Gbp
NG based on genome size 3.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.