Aythya ferina

common pochard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAytFer
  name: Aythya ferina
  taxon_id: 219593
  common_name: common pochard
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAytFer1
      biosample_id: SAMEA112468034
      sex: female
  genome_size: 1349640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAytFer1 137.31 Gbp 101.74x 63.8 GiB
Arima bAytFer1 129.25 Gbp 95.77x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAytFer1 PacBio HiFi (.bam) 137.31 Gbp 101.74x 63.8 GiB
Arima 129.25 Gbp 95.77x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 27 February 2024
bAytFer1.hap1.asm.20240227.fasta.gz (345.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.58 Mbp 1 207.52 Mbp
20 29 6.99 Mbp 2 160.57 Mbp
30 50 6.16 Mbp 3 120.40 Mbp
40 74 4.72 Mbp 4 77.69 Mbp
50 106 3.88 Mbp 6 57.14 Mbp
60 146 2.89 Mbp 10 32.72 Mbp
70 206 1.71 Mbp 15 20.81 Mbp
80 317 0.89 Mbp 28 4.59 Mbp
90 999 43.58 Kbp 585 44.52 Kbp
100 0 0
0.918x 1884 1.24 Gbp 1465 1.24 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 27 February 2024
bAytFer1.hap2.asm.20240227.fasta.gz (331.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.88 Mbp 1 207.39 Mbp
20 29 7.30 Mbp 2 160.81 Mbp
30 51 5.32 Mbp 3 121.05 Mbp
40 78 4.61 Mbp 4 77.20 Mbp
50 113 3.38 Mbp 6 57.38 Mbp
60 158 2.48 Mbp 10 32.54 Mbp
70 225 1.63 Mbp 15 21.33 Mbp
80 338 0.86 Mbp 27 4.64 Mbp
90 0 0
100 0 0
0.866x 880 1.17 Gbp 451 1.17 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bAytFer1.MT.20240227.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.