Abramis brama

common bream

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fAbrBra
  name: Abramis brama
  taxon_id: 38527
  common_name: common bream
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fAbrBra2
      biosample_id: SAMEA11296536
      sex:
  genome_size: 1271400000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 3.0 PierreSelim (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fAbrBra2 49.89 Gbp 39.24x 27.5 GiB
Arima fAbrBra2 139.91 Gbp 110.05x 40.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 23 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAbrBra2 PacBio HiFi (.bam) 49.89 Gbp 39.24x 27.5 GiB
Arima 139.91 Gbp 110.05x 40.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 23 December 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_cambridge from 29 December 2023
fAbrBra2.pri.asm.20231229.fasta.gz (324.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.04 Mbp 2 67.01 Mbp
20 37 5.36 Mbp 4 59.17 Mbp
30 64 4.42 Mbp 7 46.18 Mbp
40 94 3.81 Mbp 10 44.55 Mbp
50 131 3.08 Mbp 13 39.32 Mbp
60 177 2.45 Mbp 16 36.76 Mbp
70 239 1.72 Mbp 19 35.55 Mbp
80 333 1.03 Mbp 23 30.63 Mbp
90 0 0
100 0 0
0.894x 923 1.14 Gbp 251 1.14 Gbp
NG based on genome size 1.27 Gbp.
Individual 2 Alternate Assembly
Version assembly_cambridge from 29 December 2023
fAbrBra2.alt.asm.20231229.fasta.gz (298.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 70 1.37 Mbp 70 1.37 Mbp
20 186 0.90 Mbp 186 0.90 Mbp
30 352 0.66 Mbp 352 0.66 Mbp
40 578 480.86 Kbp 578 480.86 Kbp
50 891 342.91 Kbp 891 342.91 Kbp
60 1356 216.43 Kbp 1356 216.43 Kbp
70 2224 93.40 Kbp 2224 93.40 Kbp
80 5277 25.27 Kbp 5277 25.27 Kbp
90 0 0
100 0 0
0.835x 7741 1.06 Gbp 7741 1.06 Gbp
NG based on genome size 1.27 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 December 2023
fAbrBra2.MT.20231229.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.