Tursiops truncatus

bottlenose dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank mTurTru1: GCA_011762535.1 mTurTru1: GCA_011762515.1
ENA mTurTru1: GCA_011762535.1 mTurTru1: GCA_011762515.1
UCSC Genome Browser mTurTru1: GCA_011762535.1 mTurTru1: GCA_011762515.1

metadata.yaml (view) (edit on github)
species:
  common_name: bottlenose dolphin
  family:
    name: Delphinidae
  genome_size: 3200000000
  genome_size_method: null
  individuals:
  - short_name: mTurTru1
  name: Tursiops truncatus
  order:
    name: Artiodactyla
  short_name: mTurTru
  taxon_id: 9739
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mTurTru1 203.70 Gbp 63.66x 349.4 GiB
10x mTurTru1 323.11 Gbp 100.97x 154.6 GiB
Bionano mTurTru1 N/A 236.40x 1.0 GiB
Arima mTurTru1 223.19 Gbp 69.75x 144.6 GiB
Illumina mTurTru2 206.50 Gbp 64.53x 101.8 GiB
mTurTru3 229.65 Gbp 71.77x 113.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.20 Gbp.
Last upload on 29 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mTurTru1 PacBio CLR 203.70 Gbp 63.66x 349.4 GiB
10x 323.11 Gbp 100.97x 154.6 GiB
Bionano N/A 236.40x 1.0 GiB
Arima 223.19 Gbp 69.75x 144.6 GiB
mTurTru2 Illumina 206.50 Gbp 64.53x 101.8 GiB
mTurTru3 Illumina 229.65 Gbp 71.77x 113.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.20 Gbp.
Last upload on 29 August 2019.
Assemblies
Individual 1 Merged Trio Assembly
Version assembly_curated from 15 January 2020
mTurTru1.mat.Y.cur.20200115.fasta.gz (688.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 23.41 Mbp 1 176.47 Mbp
20 26 15.76 Mbp 3 144.18 Mbp
30 50 11.70 Mbp 6 115.60 Mbp
40 81 8.63 Mbp 8 108.43 Mbp
50 123 6.85 Mbp 12 89.33 Mbp
60 184 3.75 Mbp 15 86.29 Mbp
70 317 1.30 Mbp 19 58.64 Mbp
80 0 0
90 0 0
100 0 0
0.741x 1035 2.37 Gbp 361 2.38 Gbp
NG based on genome size 3.20 Gbp.
Individual 1 Maternal Assembly
Version assembly_curated from 30 August 2019
mTurTru1.mat.decon.20190830.fasta.gz (691.8 MiB)

Quality: 24.9 errors/Mb (QV=46.04)

Contigs Scaffolds
NG LG Len LG Len
10 9 23.41 Mbp 2 120.55 Mbp
20 26 15.76 Mbp 4 108.43 Mbp
30 50 11.70 Mbp 8 97.23 Mbp
40 81 8.64 Mbp 11 88.99 Mbp
50 122 6.85 Mbp 15 78.15 Mbp
60 184 3.72 Mbp 19 55.44 Mbp
70 321 1.18 Mbp 29 22.07 Mbp
80 0 0
90 0 0
100 0 0
0.744x 1634 2.38 Gbp 985 2.39 Gbp
NG based on genome size 3.20 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 30 August 2019
mTurTru1.pat.decon.20190830.fasta.gz (680.0 MiB)

Quality: 66.2 errors/Mb (QV=41.79)

Contigs Scaffolds
NG LG Len LG Len
10 8 29.62 Mbp 1 149.93 Mbp
20 21 20.46 Mbp 4 108.57 Mbp
30 40 15.12 Mbp 7 101.97 Mbp
40 64 11.24 Mbp 11 87.03 Mbp
50 98 8.16 Mbp 15 77.88 Mbp
60 149 4.67 Mbp 20 46.18 Mbp
70 386 211.56 Kbp 31 9.47 Mbp
80 0 0
90 0 0
100 0 0
0.729x 2034 2.33 Gbp 1166 2.38 Gbp
NG based on genome size 3.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mTurTru1.MT.20190820.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.