Melospiza melodia
song sparrow
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bMelMel1: GCA_022749695.1 | bMelMel1: GCA_022749775.1 |
ENA | bMelMel1: GCA_022749695.1 | bMelMel1: GCA_022749775.1 |
UCSC Genome Browser | bMelMel1: GCA_022749695.1 | bMelMel1: GCA_022749775.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 4.0 Simon Pierre Barrette (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 March 2024.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bMelMel2 | PacBio HiFi (subreads) | 742.27 Gbp | 530.57x | 1.3 TiB | |
PacBio HiFi (.fq) | 42.63 Gbp | 30.47x | 35.0 GiB | ||
Arima | 145.05 Gbp | 103.68x | 70.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 March 2024.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 March 2024.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 21 August 2023
bMelMel2.pri.cur.20230821.fasta.gz (407.3 MiB)
Quality: not computed
Version assembly_curated from 21 August 2023
bMelMel2.pri.cur.20230821.fasta.gz (407.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 52.57 Mbp | 1 | 173.22 Mbp |
20 | 6 | 40.83 Mbp | 2 | 142.30 Mbp |
30 | 9 | 34.69 Mbp | 3 | 138.71 Mbp |
40 | 14 | 28.20 Mbp | 5 | 95.15 Mbp |
50 | 19 | 23.12 Mbp | 6 | 82.36 Mbp |
60 | 26 | 19.15 Mbp | 8 | 51.68 Mbp |
70 | 37 | 9.66 Mbp | 12 | 31.76 Mbp |
80 | 55 | 6.27 Mbp | 17 | 20.78 Mbp |
90 | 81 | 4.26 Mbp | 26 | 13.70 Mbp |
100 | 130 | 1.89 Mbp | 38 | 9.04 Mbp |
1.104x | 653 | 1.54 Gbp | 415 | 1.55 Gbp |
NG based on genome size 1.40 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 21 August 2023
bMelMel2.alt.cur.20230821.fasta.gz (360.1 MiB)
Quality: not computed
Version assembly_curated from 21 August 2023
bMelMel2.alt.cur.20230821.fasta.gz (360.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 8 | 15.41 Mbp | 8 | 15.41 Mbp |
20 | 19 | 10.89 Mbp | 19 | 10.89 Mbp |
30 | 35 | 7.27 Mbp | 35 | 7.27 Mbp |
40 | 58 | 5.22 Mbp | 58 | 5.22 Mbp |
50 | 90 | 3.65 Mbp | 90 | 3.65 Mbp |
60 | 135 | 2.59 Mbp | 135 | 2.59 Mbp |
70 | 205 | 1.49 Mbp | 205 | 1.49 Mbp |
80 | 330 | 0.80 Mbp | 330 | 0.80 Mbp |
90 | 692 | 179.54 Kbp | 692 | 179.54 Kbp |
100 | 0 | 0 | ||
0.969x | 2328 | 1.36 Gbp | 2328 | 1.36 Gbp |
NG based on genome size 1.40 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 March 2023
bMelMel2.MT.20230307.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 7 March 2023
bMelMel2.MT.20230307.fasta.gz (5.4 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.