Vipera berus
adder
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | rVipBer3 | 181.57 Gbp | 78.01x | 73.8 GiB | |
Arima | rVipBer3 | 298.02 Gbp | 128.04x | 90.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
rVipBer3 | PacBio HiFi (.bam) | 181.57 Gbp | 78.01x | 73.8 GiB | |
Arima | 298.02 Gbp | 128.04x | 90.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_cambridge from 5 March 2024
rVipBer3.hap1.asm.20240305.fasta.gz (474.4 MiB)
Quality: not computed
Version assembly_cambridge from 5 March 2024
rVipBer3.hap1.asm.20240305.fasta.gz (474.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 16 | 10.69 Mbp | 1 | 362.53 Mbp |
20 | 43 | 7.16 Mbp | 2 | 285.58 Mbp |
30 | 80 | 5.68 Mbp | 3 | 218.22 Mbp |
40 | 128 | 4.06 Mbp | 4 | 129.19 Mbp |
50 | 205 | 2.22 Mbp | 6 | 104.75 Mbp |
60 | 351 | 1.12 Mbp | 8 | 91.85 Mbp |
70 | 863 | 148.92 Kbp | 24 | 1.94 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.717x | 1604 | 1.67 Gbp | 591 | 1.67 Gbp |
NG based on genome size 2.33 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_cambridge from 5 March 2024
rVipBer3.hap2.asm.20240305.fasta.gz (436.4 MiB)
Quality: not computed
Version assembly_cambridge from 5 March 2024
rVipBer3.hap2.asm.20240305.fasta.gz (436.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 18 | 10.46 Mbp | 1 | 361.72 Mbp |
20 | 45 | 7.39 Mbp | 2 | 285.27 Mbp |
30 | 82 | 5.34 Mbp | 3 | 215.68 Mbp |
40 | 137 | 3.28 Mbp | 4 | 118.82 Mbp |
50 | 238 | 1.60 Mbp | 6 | 91.91 Mbp |
60 | 492 | 0.53 Mbp | 12 | 22.23 Mbp |
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.656x | 1343 | 1.53 Gbp | 384 | 1.53 Gbp |
NG based on genome size 2.33 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 March 2024
rVipBer3.MT.20240305.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 5 March 2024
rVipBer3.MT.20240305.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.