Streptopelia decaocto
Eurasian collared-dove
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bStrDea1 | 58.19 Gbp | 45.08x | 15.9 GiB | |
Arima | bStrDea1 | 118.27 Gbp | 91.61x | 32.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.29 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 1.29 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bStrDea1 | PacBio HiFi (.bam) | 58.19 Gbp | 45.08x | 15.9 GiB | |
Arima | 118.27 Gbp | 91.61x | 32.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.29 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 1.29 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 8 March 2024
bStrDea1.hap1.asm.20240308.fasta.gz (310.3 MiB)
Quality: not computed
Version assembly_cambridge from 8 March 2024
bStrDea1.hap1.asm.20240308.fasta.gz (310.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 13 | 8.32 Mbp | 1 | 212.76 Mbp |
20 | 33 | 5.44 Mbp | 2 | 157.62 Mbp |
30 | 60 | 4.26 Mbp | 3 | 121.58 Mbp |
40 | 93 | 3.46 Mbp | 4 | 81.86 Mbp |
50 | 137 | 2.43 Mbp | 5 | 77.55 Mbp |
60 | 197 | 1.87 Mbp | 7 | 68.85 Mbp |
70 | 280 | 1.32 Mbp | 10 | 22.06 Mbp |
80 | 398 | 0.90 Mbp | 18 | 12.37 Mbp |
90 | 639 | 275.08 Kbp | 90 | 452.37 Kbp |
100 | 3033 | 12.29 Kbp | 2364 | 13.16 Kbp |
1.001x | 3149 | 1.29 Gbp | 2491 | 1.29 Gbp |
NG based on genome size 1.29 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 8 March 2024
bStrDea1.hap2.asm.20240308.fasta.gz (302.3 MiB)
Quality: not computed
Version assembly_cambridge from 8 March 2024
bStrDea1.hap2.asm.20240308.fasta.gz (302.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 7.39 Mbp | 1 | 213.43 Mbp |
20 | 36 | 5.31 Mbp | 2 | 162.36 Mbp |
30 | 64 | 4.09 Mbp | 3 | 120.45 Mbp |
40 | 100 | 3.25 Mbp | 4 | 82.31 Mbp |
50 | 145 | 2.53 Mbp | 5 | 77.99 Mbp |
60 | 203 | 1.89 Mbp | 7 | 69.28 Mbp |
70 | 283 | 1.39 Mbp | 10 | 22.37 Mbp |
80 | 397 | 0.89 Mbp | 17 | 12.59 Mbp |
90 | 660 | 211.68 Kbp | 86 | 388.45 Kbp |
100 | 0 | 0 | ||
0.930x | 1273 | 1.20 Gbp | 611 | 1.20 Gbp |
NG based on genome size 1.29 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
bStrDea1.MT.20240308.fasta.gz (5.1 KiB)
Quality: not computed
Version assembly_MT_cambridge from 8 March 2024
bStrDea1.MT.20240308.fasta.gz (5.1 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.