Podarcis raffonei
Aeolian wall lizard
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | rPodRaf1: GCA_027172205.1 | rPodRaf1: GCA_027172095.1 |
ENA | rPodRaf1: GCA_027172205.1 | rPodRaf1: GCA_027172095.1 |
UCSC Genome Browser | rPodRaf1: GCA_027172205.1 | rPodRaf1: GCA_027172095.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Federico Muciaccia (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.95 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.95 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.95 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.95 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 January 2022
rPodRaf1.pri.cur.20220126.fasta.gz (435.7 MiB)
Quality: 0.6 errors/Mb (QV=62.55)
Version assembly_curated from 26 January 2022
rPodRaf1.pri.cur.20220126.fasta.gz (435.7 MiB)
Quality: 0.6 errors/Mb (QV=62.55)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 104.57 Mbp | 1 | 127.26 Mbp |
20 | 3 | 93.60 Mbp | 2 | 124.66 Mbp |
30 | 6 | 67.80 Mbp | 4 | 102.32 Mbp |
40 | 9 | 61.44 Mbp | 6 | 93.62 Mbp |
50 | 12 | 55.22 Mbp | 9 | 79.25 Mbp |
60 | 16 | 43.50 Mbp | 11 | 61.44 Mbp |
70 | 23 | 17.46 Mbp | 15 | 45.10 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.776x | 57 | 1.51 Gbp | 27 | 1.51 Gbp |
NG based on genome size 1.95 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 January 2022
rPodRaf1.alt.cur.20220126.fasta.gz (52.7 MiB)
Quality: not computed
Version assembly_curated from 26 January 2022
rPodRaf1.alt.cur.20220126.fasta.gz (52.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 0 | 0 | ||
20 | 0 | 0 | ||
30 | 0 | 0 | ||
40 | 0 | 0 | ||
50 | 0 | 0 | ||
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.093x | 4814 | 182.03 Mbp | 4811 | 182.03 Mbp |
NG based on genome size 1.95 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.