Podarcis pityusensis
Ibiza wall lizard
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | rPodPit1 | 85.42 Gbp | 32.35x | 28.0 GiB | |
Arima | rPodPit1 | 553.94 Gbp | 209.78x | 152.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.64 Gbp.
Last upload on 8 March 2024.
Coverage based on genome size 2.64 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
rPodPit1 | PacBio HiFi (.bam) | 85.42 Gbp | 32.35x | 28.0 GiB | |
Arima | 553.94 Gbp | 209.78x | 152.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.64 Gbp.
Last upload on 8 March 2024.
Coverage based on genome size 2.64 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 1 March 2024
rPodPit1.hap1.asm.20240301.fasta.gz (443.7 MiB)
Quality: not computed
Version assembly_cambridge from 1 March 2024
rPodPit1.hap1.asm.20240301.fasta.gz (443.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 60 | 3.21 Mbp | 3 | 120.81 Mbp |
20 | 160 | 2.25 Mbp | 5 | 100.10 Mbp |
30 | 303 | 1.55 Mbp | 8 | 89.11 Mbp |
40 | 511 | 1.01 Mbp | 11 | 64.35 Mbp |
50 | 864 | 0.52 Mbp | 16 | 43.28 Mbp |
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.578x | 2574 | 1.53 Gbp | 1139 | 1.53 Gbp |
NG based on genome size 2.64 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 1 March 2024
rPodPit1.hap2.asm.20240301.fasta.gz (423.3 MiB)
Quality: not computed
Version assembly_cambridge from 1 March 2024
rPodPit1.hap2.asm.20240301.fasta.gz (423.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 56 | 3.43 Mbp | 2 | 125.65 Mbp |
20 | 151 | 2.27 Mbp | 5 | 98.87 Mbp |
30 | 293 | 1.51 Mbp | 8 | 88.05 Mbp |
40 | 504 | 0.99 Mbp | 11 | 63.86 Mbp |
50 | 896 | 432.30 Kbp | 16 | 42.68 Mbp |
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.550x | 1690 | 1.45 Gbp | 358 | 1.45 Gbp |
NG based on genome size 2.64 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 March 2024
rPodPit1.MT.20240301.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 1 March 2024
rPodPit1.MT.20240301.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.