Nansenia antarctica
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
---|
CC BY-NC 3.0 U.N. FAO (FishBase)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fNanAnt1 | 63.34 Gbp | 57.80x | 135.5 GiB | |
Arima | fNanAnt1 | 252.13 Gbp | 230.08x | 117.9 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.10 Gbp.
Last upload on 8 August 2023.
Coverage based on genome size 1.10 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fNanAnt1 | PacBio HiFi (.bam) | 63.34 Gbp | 57.80x | 135.5 GiB | |
Arima | 252.13 Gbp | 230.08x | 117.9 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.10 Gbp.
Last upload on 8 August 2023.
Coverage based on genome size 1.10 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 3 August 2023
fNanAnt1.pri.asm.20230803.fasta.gz (288.4 MiB)
Quality: not computed
Version assembly_cambridge from 3 August 2023
fNanAnt1.pri.asm.20230803.fasta.gz (288.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 34 | 2.41 Mbp | 1 | 110.94 Mbp |
20 | 89 | 1.76 Mbp | 3 | 77.90 Mbp |
30 | 161 | 1.25 Mbp | 4 | 76.87 Mbp |
40 | 261 | 0.97 Mbp | 6 | 71.09 Mbp |
50 | 391 | 0.75 Mbp | 7 | 56.11 Mbp |
60 | 567 | 0.52 Mbp | 10 | 37.35 Mbp |
70 | 819 | 363.54 Kbp | 13 | 32.16 Mbp |
80 | 1201 | 226.09 Kbp | 17 | 25.68 Mbp |
90 | 1891 | 108.58 Kbp | 36 | 1.56 Mbp |
100 | 4541 | 1.00 Kbp | 1307 | 1.00 Kbp |
1.000x | 4541 | 1.10 Gbp | 1307 | 1.10 Gbp |
NG based on genome size 1.10 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 3 August 2023
fNanAnt1.alt.asm.20230803.fasta.gz (242.5 MiB)
Quality: not computed
Version assembly_cambridge from 3 August 2023
fNanAnt1.alt.asm.20230803.fasta.gz (242.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 77 | 0.94 Mbp | 77 | 0.94 Mbp |
20 | 212 | 0.61 Mbp | 212 | 0.61 Mbp |
30 | 404 | 441.44 Kbp | 404 | 441.44 Kbp |
40 | 672 | 321.10 Kbp | 672 | 321.10 Kbp |
50 | 1034 | 235.75 Kbp | 1034 | 235.75 Kbp |
60 | 1540 | 166.67 Kbp | 1540 | 166.67 Kbp |
70 | 2262 | 114.34 Kbp | 2262 | 114.34 Kbp |
80 | 3351 | 73.13 Kbp | 3351 | 73.13 Kbp |
90 | 5138 | 42.55 Kbp | 5138 | 42.55 Kbp |
100 | 8904 | 2.60 Kbp | 8904 | 2.60 Kbp |
1.000x | 8904 | 1.00 Gbp | 8904 | 1.00 Gbp |
NG based on genome size 1.10 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 3 August 2023
fNanAnt1.MT.20230803.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 3 August 2023
fNanAnt1.MT.20230803.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.