Myotis mystacinus
whiskered bat
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | mMyoMys1 | 89.41 Gbp | 47.37x | 30.8 GiB | |
Arima | mMyoMys1 | 130.42 Gbp | 69.10x | 36.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mMyoMys1 | PacBio HiFi (.bam) | 89.41 Gbp | 47.37x | 30.8 GiB | |
Arima | 130.42 Gbp | 69.10x | 36.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 8 March 2024
mMyoMys1.hap1.asm.20240308.fasta.gz (534.8 MiB)
Quality: not computed
Version assembly_cambridge from 8 March 2024
mMyoMys1.hap1.asm.20240308.fasta.gz (534.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 25 | 6.20 Mbp | 1 | 228.90 Mbp |
20 | 61 | 4.60 Mbp | 2 | 217.84 Mbp |
30 | 108 | 3.61 Mbp | 3 | 217.54 Mbp |
40 | 165 | 3.03 Mbp | 4 | 113.99 Mbp |
50 | 235 | 2.40 Mbp | 6 | 103.63 Mbp |
60 | 322 | 1.98 Mbp | 8 | 94.93 Mbp |
70 | 432 | 1.52 Mbp | 10 | 85.28 Mbp |
80 | 572 | 1.22 Mbp | 12 | 79.58 Mbp |
90 | 754 | 0.88 Mbp | 15 | 61.64 Mbp |
100 | 1024 | 0.53 Mbp | 19 | 44.08 Mbp |
1.093x | 2209 | 2.06 Gbp | 666 | 2.06 Gbp |
NG based on genome size 1.89 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 8 March 2024
mMyoMys1.hap2.asm.20240308.fasta.gz (520.1 MiB)
Quality: not computed
Version assembly_cambridge from 8 March 2024
mMyoMys1.hap2.asm.20240308.fasta.gz (520.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 23 | 6.88 Mbp | 1 | 230.37 Mbp |
20 | 57 | 4.77 Mbp | 2 | 216.61 Mbp |
30 | 103 | 3.64 Mbp | 3 | 216.59 Mbp |
40 | 161 | 3.01 Mbp | 4 | 113.77 Mbp |
50 | 230 | 2.41 Mbp | 6 | 98.77 Mbp |
60 | 318 | 1.94 Mbp | 8 | 93.14 Mbp |
70 | 428 | 1.52 Mbp | 10 | 83.34 Mbp |
80 | 569 | 1.19 Mbp | 13 | 61.71 Mbp |
90 | 756 | 0.85 Mbp | 16 | 54.52 Mbp |
100 | 1050 | 449.13 Kbp | 21 | 17.68 Mbp |
1.063x | 1787 | 2.01 Gbp | 360 | 2.01 Gbp |
NG based on genome size 1.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
mMyoMys1.MT.20240308.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_cambridge from 8 March 2024
mMyoMys1.MT.20240308.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.