Lampetra fluviatilis
European river lamprey
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
---|
No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | kcLamFluv1 | 28.60 Gbp | 21.34x | 74.0 GiB | |
Arima | kcLamFluv1 | 89.16 Gbp | 66.55x | 29.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
kcLamFluv1 | PacBio HiFi (.bam) | 28.60 Gbp | 21.34x | 74.0 GiB | |
Arima | 89.16 Gbp | 66.55x | 29.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 7 November 2023
kcLamFluv1.pri.asm.20231107.fasta.gz (279.8 MiB)
Quality: not computed
Version assembly_cambridge from 7 November 2023
kcLamFluv1.pri.asm.20231107.fasta.gz (279.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 28 | 3.65 Mbp | 4 | 24.38 Mbp |
20 | 73 | 2.50 Mbp | 12 | 15.78 Mbp |
30 | 137 | 1.77 Mbp | 21 | 14.05 Mbp |
40 | 229 | 1.24 Mbp | 31 | 13.01 Mbp |
50 | 364 | 0.80 Mbp | 42 | 11.34 Mbp |
60 | 591 | 426.14 Kbp | 55 | 8.65 Mbp |
70 | 1151 | 135.40 Kbp | 90 | 1.04 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.780x | 3324 | 1.05 Gbp | 1742 | 1.05 Gbp |
NG based on genome size 1.34 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 7 November 2023
kcLamFluv1.alt.asm.20231107.fasta.gz (233.2 MiB)
Quality: not computed
Version assembly_cambridge from 7 November 2023
kcLamFluv1.alt.asm.20231107.fasta.gz (233.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 74 | 1.36 Mbp | 74 | 1.36 Mbp |
20 | 203 | 0.80 Mbp | 203 | 0.80 Mbp |
30 | 403 | 0.57 Mbp | 403 | 0.57 Mbp |
40 | 694 | 378.74 Kbp | 694 | 378.74 Kbp |
50 | 1175 | 200.40 Kbp | 1175 | 200.40 Kbp |
60 | 2191 | 83.17 Kbp | 2191 | 83.17 Kbp |
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.699x | 5693 | 0.94 Gbp | 5693 | 0.94 Gbp |
NG based on genome size 1.34 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
kcLamFluv1.MT.20231107.fasta.gz (5.2 KiB)
Quality: not computed
Version assembly_MT_cambridge from 7 November 2023
kcLamFluv1.MT.20231107.fasta.gz (5.2 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.