Haemorhous mexicanus
house finch
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bHaeMex1: GCA_027477595.1 | bHaeMex1: GCA_027406555.1 |
ENA | bHaeMex1: GCA_027477595.1 | bHaeMex1: GCA_027406555.1 |
UCSC Genome Browser | bHaeMex1: GCA_027477595.1 | bHaeMex1: GCA_027406555.1 |
metadata.yaml (view) (edit on github) |
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CC BY 2.0 Nigel (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.37 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.37 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.37 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.37 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 February 2022
bHaeMex1.pri.cur.20220203.fasta.gz (320.1 MiB)
Quality: 0.5 errors/Mb (QV=63.16)
Version assembly_curated from 3 February 2022
bHaeMex1.pri.cur.20220203.fasta.gz (320.1 MiB)
Quality: 0.5 errors/Mb (QV=63.16)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 44.30 Mbp | 0 | 159.31 Mbp |
20 | 6 | 29.77 Mbp | 1 | 122.82 Mbp |
30 | 12 | 21.31 Mbp | 3 | 89.32 Mbp |
40 | 19 | 16.93 Mbp | 4 | 78.19 Mbp |
50 | 28 | 13.36 Mbp | 6 | 66.87 Mbp |
60 | 40 | 9.46 Mbp | 10 | 26.78 Mbp |
70 | 61 | 4.08 Mbp | 16 | 17.44 Mbp |
80 | 126 | 0.83 Mbp | 27 | 7.00 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.831x | 478 | 1.14 Gbp | 183 | 1.15 Gbp |
NG based on genome size 1.37 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 3 February 2022
bHaeMex1.alt.cur.20220203.fasta.gz (294.3 MiB)
Quality: not computed
Version assembly_curated from 3 February 2022
bHaeMex1.alt.cur.20220203.fasta.gz (294.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 13.45 Mbp | 7 | 13.45 Mbp |
20 | 20 | 9.30 Mbp | 20 | 9.30 Mbp |
30 | 39 | 6.23 Mbp | 39 | 6.23 Mbp |
40 | 66 | 4.17 Mbp | 66 | 4.17 Mbp |
50 | 105 | 2.94 Mbp | 105 | 2.94 Mbp |
60 | 168 | 1.69 Mbp | 168 | 1.69 Mbp |
70 | 304 | 0.55 Mbp | 304 | 0.55 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.759x | 1004 | 1.04 Gbp | 1003 | 1.04 Gbp |
NG based on genome size 1.37 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.