Gavia stellata
red-throated loon
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 February 2024.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 February 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 February 2024.
Coverage based on genome size 1.40 Gbp.
Last upload on 6 February 2024.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 27 June 2023
bGavSte3.hap1.cur.20230627.fasta.gz (380.9 MiB)
Quality: not computed
Version assembly_curated from 27 June 2023
bGavSte3.hap1.cur.20230627.fasta.gz (380.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 30.29 Mbp | 2 | 113.82 Mbp |
20 | 10 | 21.88 Mbp | 3 | 105.09 Mbp |
30 | 17 | 18.14 Mbp | 4 | 89.71 Mbp |
40 | 26 | 15.22 Mbp | 6 | 66.80 Mbp |
50 | 36 | 12.02 Mbp | 8 | 50.56 Mbp |
60 | 49 | 9.70 Mbp | 12 | 33.66 Mbp |
70 | 68 | 5.51 Mbp | 17 | 22.27 Mbp |
80 | 105 | 2.54 Mbp | 25 | 13.79 Mbp |
90 | 312 | 165.94 Kbp | 107 | 229.14 Kbp |
100 | 3225 | 12.60 Kbp | 2965 | 12.60 Kbp |
1.000x | 3225 | 1.40 Gbp | 2965 | 1.40 Gbp |
NG based on genome size 1.40 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 27 June 2023
bGavSte3.hap2.cur.20230627.fasta.gz (372.5 MiB)
Quality: not computed
Version assembly_curated from 27 June 2023
bGavSte3.hap2.cur.20230627.fasta.gz (372.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 26.91 Mbp | 1 | 133.33 Mbp |
20 | 9 | 22.60 Mbp | 3 | 105.02 Mbp |
30 | 15 | 19.36 Mbp | 4 | 89.49 Mbp |
40 | 22 | 16.63 Mbp | 6 | 65.28 Mbp |
50 | 31 | 13.77 Mbp | 8 | 50.64 Mbp |
60 | 42 | 10.60 Mbp | 10 | 41.84 Mbp |
70 | 58 | 6.69 Mbp | 15 | 25.04 Mbp |
80 | 88 | 3.02 Mbp | 21 | 18.13 Mbp |
90 | 161 | 0.95 Mbp | 32 | 6.70 Mbp |
100 | 1434 | 17.34 Kbp | 1185 | 17.34 Kbp |
1.000x | 1434 | 1.32 Gbp | 1185 | 1.32 Gbp |
NG based on genome size 1.40 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 April 2023
bGavSte3.MT.20230407.fasta.gz (5.5 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 7 April 2023
bGavSte3.MT.20230407.fasta.gz (5.5 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.