Danio rerio
zebrafish
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fDanRer4: GCA_944039275.1 | fDanRer4: GCA_944039255.1 |
ENA | fDanRer4: GCA_944039275.1 | fDanRer4: GCA_944039255.1 |
UCSC Genome Browser | fDanRer4: GCA_944039275.1 | fDanRer4: GCA_944039255.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 2.0, Lynn Ketchum (wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 20 January 2024.
Coverage based on genome size .
Last upload on 20 January 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fDanRer12 | PacBio HiFi (subreads) | 4468.83 Gbp | N/A | 7.5 TiB | |
PacBio HiFi (.fq) | 276.16 Gbp | N/A | 254.0 GiB | ||
PacBio HiFi (.bam) | 279.04 Gbp | N/A | 1.0 TiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 20 January 2024.
Coverage based on genome size .
Last upload on 20 January 2024.
Assemblies
Individual 1 Maternal Assembly
Version assembly_curated from 22 May 2020
fDreSAT1.mat.cur.20200522.fasta.gz (387.1 MiB)
Quality: not computed
Version assembly_curated from 22 May 2020
fDreSAT1.mat.cur.20200522.fasta.gz (387.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 9 | 12.11 Mbp | 1 | 72.59 Mbp |
20 | 22 | 8.09 Mbp | 4 | 59.97 Mbp |
30 | 42 | 5.79 Mbp | 6 | 59.35 Mbp |
40 | 68 | 4.64 Mbp | 8 | 55.94 Mbp |
50 | 102 | 3.59 Mbp | 11 | 54.39 Mbp |
60 | 143 | 2.91 Mbp | 13 | 53.21 Mbp |
70 | 198 | 2.10 Mbp | 16 | 49.38 Mbp |
80 | 278 | 1.39 Mbp | 19 | 45.93 Mbp |
90 | 425 | 0.55 Mbp | 22 | 38.89 Mbp |
100 | 2105 | 1.02 Kbp | 753 | 1.02 Kbp |
1.000x | 2106 | 1.36 Gbp | 754 | 1.36 Gbp |
NG based on genome size .
Individual 1 Paternal Assembly
Version assembly_curated from 22 May 2020
fDreSAT1.pat.cur.20200522.fasta.gz (385.1 MiB)
Quality: not computed
Version assembly_curated from 22 May 2020
fDreSAT1.pat.cur.20200522.fasta.gz (385.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 14.25 Mbp | 1 | 62.61 Mbp |
20 | 20 | 8.71 Mbp | 4 | 57.66 Mbp |
30 | 37 | 7.18 Mbp | 6 | 56.54 Mbp |
40 | 58 | 6.01 Mbp | 9 | 54.75 Mbp |
50 | 84 | 4.53 Mbp | 11 | 52.96 Mbp |
60 | 118 | 3.51 Mbp | 14 | 50.01 Mbp |
70 | 163 | 2.58 Mbp | 16 | 49.74 Mbp |
80 | 225 | 1.74 Mbp | 19 | 46.41 Mbp |
90 | 344 | 0.71 Mbp | 22 | 39.02 Mbp |
100 | 1963 | 1.02 Kbp | 1251 | 1.02 Kbp |
1.000x | 1964 | 1.35 Gbp | 1252 | 1.35 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fDreSAT1.MT.20191002.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 2 October 2019
fDreSAT1.MT.20191002.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.