Ciliata mustela
fivebeard rockling
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY 2.0 Massimiliano Marcelli (Wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fCilMus1 | 20.62 Gbp | 31.95x | 69.9 GiB | |
Arima | fCilMus1 | 150.06 Gbp | 232.48x | 47.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.65 Gbp.
Last upload on 8 February 2023.
Coverage based on genome size 0.65 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fCilMus1 | PacBio HiFi (.bam) | 20.62 Gbp | 31.95x | 69.9 GiB | |
Arima | 150.06 Gbp | 232.48x | 47.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.65 Gbp.
Last upload on 8 February 2023.
Coverage based on genome size 0.65 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 28 November 2023
fCilMus1.pri.asm.20231128.fasta.gz (121.8 MiB)
Quality: not computed
Version assembly_cambridge from 28 November 2023
fCilMus1.pri.asm.20231128.fasta.gz (121.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 103 | 407.70 Kbp | 2 | 34.88 Mbp |
20 | 315 | 240.46 Kbp | 4 | 31.89 Mbp |
30 | 656 | 153.66 Kbp | 6 | 29.68 Mbp |
40 | 1169 | 104.54 Kbp | 9 | 21.03 Mbp |
50 | 1933 | 68.93 Kbp | 12 | 13.12 Mbp |
60 | 3179 | 38.54 Kbp | 66 | 284.35 Kbp |
70 | 5832 | 13.46 Kbp | 1755 | 13.96 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.705x | 6252 | 454.79 Mbp | 2233 | 455.60 Mbp |
NG based on genome size 0.65 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 28 November 2023
fCilMus1.alt.asm.20231128.fasta.gz (93.9 MiB)
Quality: not computed
Version assembly_cambridge from 28 November 2023
fCilMus1.alt.asm.20231128.fasta.gz (93.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 301 | 132.01 Kbp | 301 | 132.01 Kbp |
20 | 965 | 77.27 Kbp | 965 | 77.27 Kbp |
30 | 2008 | 50.25 Kbp | 2008 | 50.25 Kbp |
40 | 3617 | 32.31 Kbp | 3617 | 32.31 Kbp |
50 | 6203 | 19.38 Kbp | 6203 | 19.38 Kbp |
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.574x | 9414 | 370.20 Mbp | 9414 | 370.20 Mbp |
NG based on genome size 0.65 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 28 November 2023
fCilMus1.MT.20231128.fasta.gz (5.5 KiB)
Quality: not computed
Version assembly_MT_cambridge from 28 November 2023
fCilMus1.MT.20231128.fasta.gz (5.5 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.