Artibeus intermedius
intermediate fruit-eating bat
Included in the VGP and BAT1K.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mArtInt1 | 95.37 Gbp | 40.13x | 74.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 6 November 2023.
Coverage based on genome size 2.38 Gbp.
Last upload on 6 November 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mArtInt1 | PacBio HiFi (.fq) | 95.37 Gbp | 40.13x | 74.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 6 November 2023.
Coverage based on genome size 2.38 Gbp.
Last upload on 6 November 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 11 September 2023
mArtInt1.hap1.cur.20230911.fasta.gz (651.1 MiB)
Quality: not computed
Version assembly_curated from 11 September 2023
mArtInt1.hap1.cur.20230911.fasta.gz (651.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 123.32 Mbp | 1 | 245.41 Mbp |
20 | 4 | 98.74 Mbp | 2 | 215.74 Mbp |
30 | 7 | 87.30 Mbp | 4 | 182.64 Mbp |
40 | 10 | 65.88 Mbp | 5 | 176.20 Mbp |
50 | 14 | 60.03 Mbp | 6 | 160.43 Mbp |
60 | 18 | 51.00 Mbp | 8 | 149.66 Mbp |
70 | 23 | 35.76 Mbp | 9 | 144.92 Mbp |
80 | 30 | 29.62 Mbp | 11 | 119.58 Mbp |
90 | 41 | 16.80 Mbp | 13 | 101.25 Mbp |
100 | 500 | 8.48 Kbp | 419 | 11.39 Kbp |
1.000x | 500 | 2.29 Gbp | 419 | 2.29 Gbp |
NG based on genome size 2.38 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 11 September 2023
mArtInt1.hap2.cur.20230911.fasta.gz (548.4 MiB)
Quality: not computed
Version assembly_curated from 11 September 2023
mArtInt1.hap2.cur.20230911.fasta.gz (548.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 139.14 Mbp | 1 | 244.72 Mbp |
20 | 3 | 137.07 Mbp | 2 | 215.03 Mbp |
30 | 5 | 103.10 Mbp | 3 | 200.04 Mbp |
40 | 7 | 96.07 Mbp | 4 | 180.18 Mbp |
50 | 9 | 74.64 Mbp | 6 | 167.57 Mbp |
60 | 13 | 57.75 Mbp | 7 | 149.72 Mbp |
70 | 17 | 43.88 Mbp | 8 | 141.47 Mbp |
80 | 23 | 33.35 Mbp | 10 | 121.43 Mbp |
90 | 31 | 18.46 Mbp | 12 | 98.81 Mbp |
100 | 243 | 8.59 Kbp | 187 | 10.83 Kbp |
1.000x | 243 | 2.08 Gbp | 187 | 2.08 Gbp |
NG based on genome size 2.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 February 2024
mArtInt1.MT.20240228.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 28 February 2024
mArtInt1.MT.20240228.fasta.gz (5.3 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.