Symphalangus syndactylus

siamang gibbon

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mSymSyn
  name: Symphalangus syndactylus
  common_name: siamang gibbon
  taxon_id: 9590
  order:
    name: Primates
  family:
    name: Hylobatidae
  individuals:
  -
      short_name: mSymSyn1
      name: Jambi
      biosample_id: SAMN30216103
      strain: null
      subspecies: null
      alt_ids:
      - Jambi_SSY
      - MIG12-29960010
      sex: male
      description: null
      provider: Lucia Carbone (Oregon Health & Science University)
      father: null
      mother: null
  genome_size: 3295860000
  genome_size_method: GoaT Fuelgen Densitometry/Flow Cytometry
  project: [ t2t ]
CC BY-SA 2.0 su neko (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mSymSyn1 4866.03 Gbp 1476.41x 8.6 TiB
PacBio HiFi (.fq) mSymSyn1 491.18 Gbp 149.03x 358.2 GiB
PacBio HiFi (.bam) mSymSyn1 1200.82 Gbp 364.34x 879.2 GiB
Oxford Nanopore Simplex mSymSyn1 711.95 Gbp 216.01x 549.8 GiB
Dovetail Genomics mSymSyn1 258.65 Gbp 78.48x 127.9 GiB
Illumina mSymSyn1 423.48 Gbp 128.49x 207.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 30 October 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mSymSyn1 PacBio HiFi (subreads) 4866.03 Gbp 1476.41x 8.6 TiB
PacBio HiFi (.fq) 491.18 Gbp 149.03x 358.2 GiB
PacBio HiFi (.bam) 1200.82 Gbp 364.34x 879.2 GiB
Oxford Nanopore Simplex 711.95 Gbp 216.01x 549.8 GiB
Dovetail Genomics 258.65 Gbp 78.48x 127.9 GiB
Illumina 423.48 Gbp 128.49x 207.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 30 October 2023.
Assemblies
Individual 1 Diploid Assembly
Version assembly_curated from 5 December 2023
mSymSyn1.dip.cur.20231205.fasta.gz (1.5 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 167.65 Mbp 2 167.65 Mbp
20 4 166.27 Mbp 4 166.27 Mbp
30 6 165.07 Mbp 6 165.07 Mbp
40 8 163.59 Mbp 8 163.59 Mbp
50 10 161.71 Mbp 10 161.71 Mbp
60 13 154.49 Mbp 13 154.49 Mbp
70 15 153.62 Mbp 15 153.62 Mbp
80 17 148.42 Mbp 17 148.42 Mbp
90 19 146.71 Mbp 19 146.71 Mbp
100 21 144.67 Mbp 21 144.67 Mbp
1.929x 70 6.36 Gbp 66 6.36 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Primary Assembly
Version assembly_curated from 5 December 2023
mSymSyn1.pri.cur.20231205.fasta.gz (786.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 167.25 Mbp 2 167.25 Mbp
20 4 161.71 Mbp 4 161.71 Mbp
30 7 154.49 Mbp 7 154.49 Mbp
40 9 153.29 Mbp 9 153.29 Mbp
50 11 146.71 Mbp 11 146.71 Mbp
60 13 141.40 Mbp 13 141.40 Mbp
70 16 120.31 Mbp 16 120.31 Mbp
80 19 106.26 Mbp 19 106.26 Mbp
90 22 80.75 Mbp 22 80.75 Mbp
100 0 0
0.990x 27 3.26 Gbp 26 3.26 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 December 2023
mSymSyn1.alt.cur.20231205.fasta.gz (744.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 166.27 Mbp 2 166.27 Mbp
20 4 164.59 Mbp 4 164.59 Mbp
30 6 162.45 Mbp 6 162.45 Mbp
40 9 145.50 Mbp 9 145.50 Mbp
50 11 136.33 Mbp 11 136.33 Mbp
60 13 134.01 Mbp 13 134.01 Mbp
70 16 112.58 Mbp 16 112.58 Mbp
80 19 101.94 Mbp 19 101.94 Mbp
90 23 75.55 Mbp 23 75.55 Mbp
100 0 0
0.939x 43 3.10 Gbp 40 3.10 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 5 December 2023
mSymSyn1.hap1.cur.20231205.fasta.gz (780.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 167.25 Mbp 2 167.25 Mbp
20 4 161.71 Mbp 4 161.71 Mbp
30 7 154.49 Mbp 7 154.49 Mbp
40 9 153.29 Mbp 9 153.29 Mbp
50 11 146.71 Mbp 11 146.71 Mbp
60 13 141.40 Mbp 13 141.40 Mbp
70 16 120.31 Mbp 16 120.31 Mbp
80 19 106.26 Mbp 19 106.26 Mbp
90 22 80.75 Mbp 22 80.75 Mbp
100 0 0
0.981x 26 3.23 Gbp 25 3.23 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 5 December 2023
mSymSyn1.hap2.cur.20231205.fasta.gz (750.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 166.27 Mbp 2 166.27 Mbp
20 4 164.59 Mbp 4 164.59 Mbp
30 6 162.45 Mbp 6 162.45 Mbp
40 9 145.50 Mbp 9 145.50 Mbp
50 11 136.33 Mbp 11 136.33 Mbp
60 13 134.01 Mbp 13 134.01 Mbp
70 16 112.58 Mbp 16 112.58 Mbp
80 19 101.94 Mbp 19 101.94 Mbp
90 23 75.55 Mbp 23 75.55 Mbp
100 0 0
0.948x 44 3.13 Gbp 41 3.13 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 22 November 2023
mSymSyn1.MT.cur.20231122.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.