Gorilla gorilla

gorilla

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mGorGor
  name: Gorilla gorilla
  common_name: gorilla
  taxon_id: 9593
  order:
    name: Primates
  family:
    name: Hominidae
  individuals:
  -
      short_name: mGorGor1
      name: Jim
      biosample_id: SAMN04003007
      strain: null
      subspecies:
        name: Gorilla gorilla gorilla
        common_name: western lowland gorilla
        taxon_id: 9595
      alt_ids:
      - KB3781
      - Jim_GGO
      sex: male
      description: null
      provider: Kateryna Makova (The Pennsylvania State University), Oliver Ryder (San Diego Zoo Wildlife Alliance, University of California San Diego)
      mother: mGorGor2
      father: mGorGor3
  -
      short_name: mGorGor2
      name: Dolly
      biosample_id: null
      strain: null
      subspecies:
        name: Gorilla gorilla gorilla
        common_name: western lowland gorilla
        taxon_id: 9595
      alt_ids:
      - ISIS24489
      sex: female
      birth_date: January 1963 (estimated)
      birth_location: Congo
      birth_type: Wild born
      description: null
      provider: Cynthia Steiner (San Diego Zoo Wildlife Alliance)
      mother: null
      father: null
  -
      short_name: mGorGor3
      name: Trib
      biosample_id: null
      strain: null
      subspecies:
        name: Gorilla gorilla gorilla
        common_name: western lowland gorilla
        taxon_id: 9595
      alt_ids:
      - ISIS24485
      sex: male
      birth_date: January 1959 (estimated)
      birth_location: Congo
      birth_type: Wild born
      description: null
      provider: Cynthia Steiner (San Diego Zoo Wildlife Alliance)
      mother: null
      father: null
  -
      short_name: mGorGor4
      name: null
      biosample_id: null
      strain: null
      alt_ids:
      - OR6737
      - GGO_OR6737
      sex: male
      description: null
      provider: Oliver Ryder (San Diego Zoo Wildlife Alliance)
      mother: null
      father: null
      samples:
      -
         sample_id: mGorGor4.testis1
         tissue: testis
         dev_stage: adult
         sample_biosample_id: SAMN31928435
  -
      short_name: mGorGor5
      name: Kamilah
      biosample_id: SAMN11078986
      strain: null
      alt_ids:
      - Kamilah_GGO
      - GGO_0661
      sex: female
      description: null
      provider: Oliver Ryder (San Diego Zoo Wildlife Alliance)
      mother: null
      father: null
  genome_size: 3491460000
  genome_size_method: GoaT Fuelgen Densitometry/Flow Cytometry
  project: [ t2t ]
CC BY-NC 2.0 Wade Tregaskis (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mGorGor1 6591.34 Gbp 1887.85x 12.0 TiB
PacBio HiFi (.fq, Q≥20) mGorGor1 153.88 Gbp 44.07x 115.1 GiB
PacBio HiFi (.fq) mGorGor1 631.48 Gbp 180.86x 450.4 GiB
mGorGor5 18.62 Gbp 5.33x 13.1 GiB
PacBio HiFi (.bam) mGorGor1 870.35 Gbp 249.28x 1.5 TiB
Oxford Nanopore Simplex mGorGor1 986.23 Gbp 282.47x 795.9 GiB
Dovetail Genomics mGorGor1 148.47 Gbp 42.52x 75.6 GiB
Illumina mGorGor1 285.39 Gbp 81.74x 141.9 GiB
mGorGor2 213.03 Gbp 61.02x 102.2 GiB
mGorGor3 250.56 Gbp 71.76x 120.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.49 Gbp.
Last upload on 23 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mGorGor1 PacBio HiFi (subreads) 6591.34 Gbp 1887.85x 12.0 TiB
PacBio HiFi (.fq, Q≥20) 153.88 Gbp 44.07x 115.1 GiB
PacBio HiFi (.fq) 631.48 Gbp 180.86x 450.4 GiB
PacBio HiFi (.bam) 870.35 Gbp 249.28x 1.5 TiB
Oxford Nanopore Simplex 986.23 Gbp 282.47x 795.9 GiB
Dovetail Genomics 148.47 Gbp 42.52x 75.6 GiB
Illumina 285.39 Gbp 81.74x 141.9 GiB
mGorGor2 Illumina 213.03 Gbp 61.02x 102.2 GiB
mGorGor3 Illumina 250.56 Gbp 71.76x 120.0 GiB
mGorGor5 PacBio HiFi (.fq) 18.62 Gbp 5.33x 13.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.49 Gbp.
Last upload on 23 January 2024.
Assemblies
Individual 1 Diploid Assembly
Version assembly_curated from 22 November 2023
mGorGor1.dip.cur.20231122.fasta.gz (1.8 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 243.85 Mbp 2 243.85 Mbp
20 3 215.37 Mbp 3 215.37 Mbp
30 5 215.07 Mbp 5 215.07 Mbp
40 7 195.33 Mbp 7 199.45 Mbp
50 9 188.22 Mbp 9 193.75 Mbp
60 11 176.48 Mbp 10 188.22 Mbp
70 13 165.07 Mbp 12 176.48 Mbp
80 15 158.53 Mbp 14 165.07 Mbp
90 17 151.56 Mbp 17 154.23 Mbp
100 19 150.80 Mbp 19 151.43 Mbp
1.977x 256 6.90 Gbp 249 6.91 Gbp
NG based on genome size 3.49 Gbp.
Individual 1 Primary Assembly
Version assembly_curated from 22 November 2023
mGorGor1.pri.cur.20231122.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 215.37 Mbp 2 215.37 Mbp
20 4 199.45 Mbp 4 199.45 Mbp
30 5 195.33 Mbp 5 195.33 Mbp
40 7 170.80 Mbp 7 170.80 Mbp
50 10 150.80 Mbp 10 150.80 Mbp
60 12 147.88 Mbp 12 147.88 Mbp
70 14 134.70 Mbp 14 134.70 Mbp
80 17 131.35 Mbp 17 131.35 Mbp
90 20 107.92 Mbp 20 107.92 Mbp
100 25 51.47 Mbp 25 54.77 Mbp
1.015x 27 3.54 Gbp 25 3.55 Gbp
NG based on genome size 3.49 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 November 2023
mGorGor1.alt.cur.20231122.fasta.gz (875.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 215.07 Mbp 2 215.07 Mbp
20 4 188.22 Mbp 4 193.75 Mbp
30 6 165.07 Mbp 5 188.22 Mbp
40 8 151.56 Mbp 7 165.07 Mbp
50 10 148.88 Mbp 10 151.43 Mbp
60 13 140.79 Mbp 12 145.83 Mbp
70 15 130.72 Mbp 15 137.29 Mbp
80 18 107.36 Mbp 17 112.73 Mbp
90 22 76.02 Mbp 21 76.02 Mbp
100 0 0
0.962x 229 3.36 Gbp 224 3.36 Gbp
NG based on genome size 3.49 Gbp.
Individual 1 Maternal Assembly
Version assembly_curated from 22 November 2023
mGorGor1.mat.cur.20231122.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 215.07 Mbp 2 215.07 Mbp
20 4 193.75 Mbp 4 199.45 Mbp
30 6 170.80 Mbp 5 193.75 Mbp
40 8 154.23 Mbp 7 170.80 Mbp
50 10 151.43 Mbp 10 151.56 Mbp
60 12 148.88 Mbp 12 150.25 Mbp
70 15 137.29 Mbp 14 145.83 Mbp
80 17 128.95 Mbp 17 130.72 Mbp
90 21 84.49 Mbp 20 105.79 Mbp
100 26 6.35 Mbp 24 54.77 Mbp
1.018x 230 3.55 Gbp 225 3.55 Gbp
NG based on genome size 3.49 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 22 November 2023
mGorGor1.pat.cur.20231122.fasta.gz (879.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 215.37 Mbp 2 215.37 Mbp
20 4 195.33 Mbp 4 195.33 Mbp
30 5 188.22 Mbp 5 188.22 Mbp
40 8 158.53 Mbp 8 158.53 Mbp
50 10 147.88 Mbp 10 147.88 Mbp
60 12 144.03 Mbp 12 144.03 Mbp
70 15 131.69 Mbp 15 131.69 Mbp
80 18 107.92 Mbp 18 107.92 Mbp
90 21 76.02 Mbp 21 76.02 Mbp
100 0 0
0.959x 26 3.35 Gbp 24 3.35 Gbp
NG based on genome size 3.49 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 22 November 2023
mGorGor1.MT.cur.20231122.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.