Vipera berus

adder

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rVipBer
  name: Vipera berus
  taxon_id: 31155
  common_name: adder
  order:
    name: Squamata
  family:
    name: Viperidae
  individuals:
    - short_name: rVipBer3
      biosample_id: SAMEA114293681
      sex: female
  genome_size: 2327640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rVipBer3 181.57 Gbp 78.01x 73.8 GiB
Arima rVipBer3 298.02 Gbp 128.04x 90.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rVipBer3 PacBio HiFi (.bam) 181.57 Gbp 78.01x 73.8 GiB
Arima 298.02 Gbp 128.04x 90.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_cambridge from 5 March 2024
rVipBer3.hap1.asm.20240305.fasta.gz (474.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 10.69 Mbp 1 362.53 Mbp
20 43 7.16 Mbp 2 285.58 Mbp
30 80 5.68 Mbp 3 218.22 Mbp
40 128 4.06 Mbp 4 129.19 Mbp
50 205 2.22 Mbp 6 104.75 Mbp
60 351 1.12 Mbp 8 91.85 Mbp
70 863 148.92 Kbp 24 1.94 Mbp
80 0 0
90 0 0
100 0 0
0.717x 1604 1.67 Gbp 591 1.67 Gbp
NG based on genome size 2.33 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_cambridge from 5 March 2024
rVipBer3.hap2.asm.20240305.fasta.gz (436.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 10.46 Mbp 1 361.72 Mbp
20 45 7.39 Mbp 2 285.27 Mbp
30 82 5.34 Mbp 3 215.68 Mbp
40 137 3.28 Mbp 4 118.82 Mbp
50 238 1.60 Mbp 6 91.91 Mbp
60 492 0.53 Mbp 12 22.23 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.656x 1343 1.53 Gbp 384 1.53 Gbp
NG based on genome size 2.33 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 March 2024
rVipBer3.MT.20240305.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.