Rhinolophus clivosus

Geoffroy's horseshoe bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mRhiCli
  name: Rhinolophus clivosus
  taxon_id: 59478
  common_name: Geoffroy's horseshoe bat
  order:
    name: Chiroptera
  family:
    name: Rhinolophidae
  individuals:
  - mRhiCli1
  genome_size: 2102700000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mRhiCli1 28.32 Gbp 13.47x 101.9 GiB
PacBio HiFi (.bam) mRhiCli1 112.98 Gbp 53.73x 406.6 GiB
Arima mRhiCli1 138.24 Gbp 65.74x 56.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.10 Gbp.
Last upload on 31 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhiCli1 PacBio HiFi (.fq) 28.32 Gbp 13.47x 101.9 GiB
PacBio HiFi (.bam) 112.98 Gbp 53.73x 406.6 GiB
Arima 138.24 Gbp 65.74x 56.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.10 Gbp.
Last upload on 31 January 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 14 February 2024
mRhiCli1.HiC.hap1.20240214.fasta.gz (647.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 105.56 Mbp 2 127.25 Mbp
20 5 100.92 Mbp 4 119.95 Mbp
30 7 83.61 Mbp 6 111.44 Mbp
40 10 78.36 Mbp 8 103.02 Mbp
50 13 68.12 Mbp 10 100.92 Mbp
60 17 57.68 Mbp 12 93.74 Mbp
70 21 45.25 Mbp 15 75.23 Mbp
80 27 31.45 Mbp 18 64.26 Mbp
90 37 16.11 Mbp 23 31.45 Mbp
100 296 13.91 Kbp 268 13.91 Kbp
1.000x 296 2.25 Gbp 268 2.25 Gbp
NG based on genome size 2.10 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 14 February 2024
mRhiCli1.HiC.hap2.20240214.fasta.gz (605.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 107.70 Mbp 1 0.58 Gbp
20 4 102.29 Mbp 1 0.58 Gbp
30 7 83.60 Mbp 2 183.41 Mbp
40 9 81.11 Mbp 3 113.59 Mbp
50 12 68.80 Mbp 5 111.77 Mbp
60 15 63.58 Mbp 7 103.53 Mbp
70 19 53.45 Mbp 9 102.29 Mbp
80 24 39.95 Mbp 11 84.43 Mbp
90 31 22.78 Mbp 14 64.03 Mbp
100 243 16.87 Kbp 212 16.87 Kbp
1.000x 243 2.10 Gbp 212 2.10 Gbp
NG based on genome size 2.10 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 14 February 2024
mRhiCli1.MT.20240214.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.