Podarcis liolepis

Columbretes wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodLio
  name: Podarcis liolepis
  taxon_id: 662736
  common_name: Columbretes wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodLio1
      biosample_id: SAMEA114217798
      sex: female
  genome_size: 1932772500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodLio1 53.50 Gbp 27.68x 20.4 GiB
Arima rPodLio1 238.76 Gbp 123.53x 67.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 19 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodLio1 PacBio HiFi (.bam) 53.50 Gbp 27.68x 20.4 GiB
Arima 238.76 Gbp 123.53x 67.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 19 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 27 February 2024
rPodLio1.hap1.asm.20240227.fasta.gz (439.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 6.63 Mbp 2 128.99 Mbp
20 58 4.82 Mbp 3 124.98 Mbp
30 103 3.92 Mbp 5 103.77 Mbp
40 157 3.16 Mbp 7 95.42 Mbp
50 229 2.36 Mbp 9 78.71 Mbp
60 327 1.68 Mbp 12 64.07 Mbp
70 471 1.04 Mbp 16 45.31 Mbp
80 837 157.48 Kbp 54 0.53 Mbp
90 0 0
100 0 0
0.811x 1210 1.57 Gbp 365 1.57 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 27 February 2024
rPodLio1.hap2.asm.20240227.fasta.gz (422.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 6.54 Mbp 2 131.14 Mbp
20 60 4.63 Mbp 3 126.07 Mbp
30 107 3.62 Mbp 5 104.05 Mbp
40 166 2.95 Mbp 7 94.33 Mbp
50 243 2.22 Mbp 9 81.26 Mbp
60 350 1.49 Mbp 12 65.13 Mbp
70 520 0.83 Mbp 16 45.33 Mbp
80 0 0
90 0 0
100 0 0
0.775x 1008 1.50 Gbp 176 1.50 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
rPodLio1.MT.20240227.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.