Podarcis gaigeae

Skyros wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodGai
  name: Podarcis gaigeae
  taxon_id: 90521
  common_name: Skyros wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodGai1
      biosample_id: SAMEA114217796
      sex: female
  genome_size: 1932772500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodGai1 64.26 Gbp 33.25x 24.0 GiB
Arima rPodGai1 191.45 Gbp 99.05x 54.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 19 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodGai1 PacBio HiFi (.bam) 64.26 Gbp 33.25x 24.0 GiB
Arima 191.45 Gbp 99.05x 54.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 19 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 27 February 2024
rPodGai1.hap1.asm.20240227.fasta.gz (434.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 6.28 Mbp 2 124.96 Mbp
20 61 4.66 Mbp 4 105.90 Mbp
30 110 3.53 Mbp 5 100.52 Mbp
40 171 2.82 Mbp 7 91.93 Mbp
50 249 2.13 Mbp 10 75.82 Mbp
60 355 1.55 Mbp 13 56.93 Mbp
70 519 0.89 Mbp 16 45.78 Mbp
80 0 0
90 0 0
100 0 0
0.783x 1163 1.51 Gbp 337 1.51 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 27 February 2024
rPodGai1.hap2.asm.20240227.fasta.gz (411.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 7.11 Mbp 2 124.56 Mbp
20 57 4.81 Mbp 4 106.67 Mbp
30 104 3.61 Mbp 5 100.48 Mbp
40 165 2.66 Mbp 7 90.61 Mbp
50 248 2.06 Mbp 10 64.96 Mbp
60 358 1.42 Mbp 13 53.98 Mbp
70 555 0.61 Mbp 17 42.14 Mbp
80 0 0
90 0 0
100 0 0
0.738x 916 1.43 Gbp 155 1.43 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
rPodGai1.MT.20240227.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.