Nycteris thebaica

Egyptian slit-faced bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mNycThe
  name: Nycteris thebaica
  taxon_id: 59467
  common_name: Egyptian slit-faced bat
  order:
    name: Chiroptera
  family:
    name: Nycteridae
  individuals:
  - mNycThe2
  genome_size: 2757960000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mNycThe2 25.32 Gbp 9.18x 90.3 GiB
PacBio HiFi (.bam) mNycThe2 105.69 Gbp 38.32x 376.7 GiB
Arima mNycThe2 227.75 Gbp 82.58x 92.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.76 Gbp.
Last upload on 31 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mNycThe2 PacBio HiFi (.fq) 25.32 Gbp 9.18x 90.3 GiB
PacBio HiFi (.bam) 105.69 Gbp 38.32x 376.7 GiB
Arima 227.75 Gbp 82.58x 92.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.76 Gbp.
Last upload on 31 January 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 16 February 2024
mNycThe2.HiC.hap1.20240216.fasta.gz (684.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 101.05 Mbp 1 308.43 Mbp
20 5 85.43 Mbp 2 233.56 Mbp
30 8 76.43 Mbp 3 186.03 Mbp
40 11 50.50 Mbp 5 174.50 Mbp
50 16 42.80 Mbp 6 138.57 Mbp
60 22 36.60 Mbp 8 133.77 Mbp
70 29 27.52 Mbp 10 113.59 Mbp
80 39 22.02 Mbp 12 95.09 Mbp
90 53 11.80 Mbp 15 72.39 Mbp
100 208 16.73 Kbp 130 16.73 Kbp
1.000x 208 2.34 Gbp 130 2.34 Gbp
NG based on genome size 2.76 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 16 February 2024
mNycThe2.HiC.hap2.20240216.fasta.gz (649.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 129.03 Mbp 1 416.42 Mbp
20 4 111.18 Mbp 2 137.95 Mbp
30 6 97.24 Mbp 3 137.87 Mbp
40 9 78.81 Mbp 5 133.77 Mbp
50 12 61.69 Mbp 7 115.68 Mbp
60 16 49.13 Mbp 9 106.54 Mbp
70 21 39.57 Mbp 11 102.85 Mbp
80 28 26.86 Mbp 13 95.32 Mbp
90 43 9.50 Mbp 16 74.88 Mbp
100 190 12.00 Kbp 123 12.00 Kbp
1.000x 190 2.22 Gbp 123 2.22 Gbp
NG based on genome size 2.76 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.