Myotis mystacinus

whiskered bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoMys
  name: Myotis mystacinus
  taxon_id: 109479
  common_name: whiskered bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoMys1
      biosample_id: SAMEA114250307
      sex: male
  genome_size: 1887540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMyoMys1 89.41 Gbp 47.37x 30.8 GiB
Arima mMyoMys1 130.42 Gbp 69.10x 36.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoMys1 PacBio HiFi (.bam) 89.41 Gbp 47.37x 30.8 GiB
Arima 130.42 Gbp 69.10x 36.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 8 March 2024
mMyoMys1.hap1.asm.20240308.fasta.gz (534.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 6.20 Mbp 1 228.90 Mbp
20 61 4.60 Mbp 2 217.84 Mbp
30 108 3.61 Mbp 3 217.54 Mbp
40 165 3.03 Mbp 4 113.99 Mbp
50 235 2.40 Mbp 6 103.63 Mbp
60 322 1.98 Mbp 8 94.93 Mbp
70 432 1.52 Mbp 10 85.28 Mbp
80 572 1.22 Mbp 12 79.58 Mbp
90 754 0.88 Mbp 15 61.64 Mbp
100 1024 0.53 Mbp 19 44.08 Mbp
1.093x 2209 2.06 Gbp 666 2.06 Gbp
NG based on genome size 1.89 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 8 March 2024
mMyoMys1.hap2.asm.20240308.fasta.gz (520.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 6.88 Mbp 1 230.37 Mbp
20 57 4.77 Mbp 2 216.61 Mbp
30 103 3.64 Mbp 3 216.59 Mbp
40 161 3.01 Mbp 4 113.77 Mbp
50 230 2.41 Mbp 6 98.77 Mbp
60 318 1.94 Mbp 8 93.14 Mbp
70 428 1.52 Mbp 10 83.34 Mbp
80 569 1.19 Mbp 13 61.71 Mbp
90 756 0.85 Mbp 16 54.52 Mbp
100 1050 449.13 Kbp 21 17.68 Mbp
1.063x 1787 2.01 Gbp 360 2.01 Gbp
NG based on genome size 1.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
mMyoMys1.MT.20240308.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.