Micromesistius poutassou

blue whiting

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fMicPou
  name: Micromesistius poutassou
  taxon_id: 81636
  common_name: blue whiting
  order:
    name: Gadiformes
  family:
    name: Gadidae
  individuals:
    - short_name: fMicPou1
      biosample_id: SAMEA111457552
      sex: female
  genome_size: 860640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fMicPou1 17.51 Gbp 20.34x 11.3 GiB
Arima fMicPou1 86.05 Gbp 99.99x 27.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMicPou1 PacBio HiFi (.bam) 17.51 Gbp 20.34x 11.3 GiB
Arima 86.05 Gbp 99.99x 27.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 28 November 2023
fMicPou1.pri.asm.20231128.fasta.gz (142.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 79 0.74 Mbp 4 22.66 Mbp
20 233 440.93 Kbp 8 20.68 Mbp
30 486 269.51 Kbp 12 19.48 Mbp
40 909 156.95 Kbp 17 16.05 Mbp
50 1685 78.00 Kbp 23 11.83 Mbp
60 3638 24.20 Kbp 561 32.81 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.627x 5194 0.54 Gbp 2093 0.54 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 28 November 2023
fMicPou1.alt.asm.20231128.fasta.gz (110.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 193 293.22 Kbp 193 293.22 Kbp
20 602 162.07 Kbp 602 162.07 Kbp
30 1303 94.03 Kbp 1303 94.03 Kbp
40 2605 47.55 Kbp 2605 47.55 Kbp
50 5486 17.68 Kbp 5486 17.68 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.515x 6507 443.11 Mbp 6507 443.11 Mbp
NG based on genome size 0.86 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 28 November 2023
fMicPou1.MT.20231128.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.