No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | fLepOcu1 | 60.49 Gbp | N/A | 31.3 GiB | |
PacBio HiFi (.bam) | fLepOcu1 | 59.99 Gbp | N/A | 245.6 GiB | |
Arima | fLepOcu1 | 75.42 Gbp | N/A | 39.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 February 2024.
Coverage based on genome size .
Last upload on 26 February 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fLepOcu1 | PacBio HiFi (.fq) | 60.49 Gbp | N/A | 31.3 GiB | |
PacBio HiFi (.bam) | 59.99 Gbp | N/A | 245.6 GiB | ||
Arima | 75.42 Gbp | N/A | 39.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 February 2024.
Coverage based on genome size .
Last upload on 26 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 5 March 2024
fLepOcu1.HiC.hap1.20240305.fasta.gz (302.7 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 5 March 2024
fLepOcu1.HiC.hap1.20240305.fasta.gz (302.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 45.95 Mbp | 2 | 78.25 Mbp |
20 | 6 | 34.28 Mbp | 3 | 74.42 Mbp |
30 | 10 | 26.01 Mbp | 5 | 60.73 Mbp |
40 | 14 | 21.78 Mbp | 7 | 58.68 Mbp |
50 | 20 | 16.91 Mbp | 9 | 43.85 Mbp |
60 | 27 | 15.58 Mbp | 12 | 38.05 Mbp |
70 | 34 | 14.15 Mbp | 16 | 21.78 Mbp |
80 | 44 | 9.71 Mbp | 22 | 15.96 Mbp |
90 | 61 | 2.95 Mbp | 32 | 6.52 Mbp |
100 | 915 | 9.38 Kbp | 867 | 9.38 Kbp |
1.000x | 915 | 1.12 Gbp | 867 | 1.12 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 5 March 2024
fLepOcu1.HiC.hap2.20240305.fasta.gz (316.8 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 5 March 2024
fLepOcu1.HiC.hap2.20240305.fasta.gz (316.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 37.64 Mbp | 2 | 78.35 Mbp |
20 | 6 | 34.26 Mbp | 4 | 63.59 Mbp |
30 | 10 | 29.24 Mbp | 6 | 60.24 Mbp |
40 | 15 | 25.02 Mbp | 8 | 53.69 Mbp |
50 | 20 | 20.02 Mbp | 10 | 43.98 Mbp |
60 | 27 | 15.43 Mbp | 13 | 37.64 Mbp |
70 | 36 | 11.27 Mbp | 18 | 17.87 Mbp |
80 | 49 | 8.11 Mbp | 26 | 11.99 Mbp |
90 | 91 | 1.34 Mbp | 52 | 1.70 Mbp |
100 | 910 | 15.28 Kbp | 858 | 15.28 Kbp |
1.000x | 910 | 1.20 Gbp | 858 | 1.20 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 6 March 2024
fLepOcu1.MT.20240306.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 6 March 2024
fLepOcu1.MT.20240306.fasta.gz (5.3 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.