Lampetra fluviatilis

European river lamprey

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kcLamFluv
  name: Lampetra fluviatilis
  taxon_id: 7748
  common_name: European river lamprey
  order:
    name: Petromyzontiformes
  family:
    name: Petromyzontidae
  individuals:
    - short_name: kcLamFluv1
      biosample_id: SAMEA111528664
      sex: female
  genome_size: 1339860000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kcLamFluv1 28.60 Gbp 21.34x 74.0 GiB
Arima kcLamFluv1 89.16 Gbp 66.55x 29.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kcLamFluv1 PacBio HiFi (.bam) 28.60 Gbp 21.34x 74.0 GiB
Arima 89.16 Gbp 66.55x 29.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 7 November 2023
kcLamFluv1.pri.asm.20231107.fasta.gz (279.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 3.65 Mbp 4 24.38 Mbp
20 73 2.50 Mbp 12 15.78 Mbp
30 137 1.77 Mbp 21 14.05 Mbp
40 229 1.24 Mbp 31 13.01 Mbp
50 364 0.80 Mbp 42 11.34 Mbp
60 591 426.14 Kbp 55 8.65 Mbp
70 1151 135.40 Kbp 90 1.04 Mbp
80 0 0
90 0 0
100 0 0
0.780x 3324 1.05 Gbp 1742 1.05 Gbp
NG based on genome size 1.34 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 7 November 2023
kcLamFluv1.alt.asm.20231107.fasta.gz (233.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 74 1.36 Mbp 74 1.36 Mbp
20 203 0.80 Mbp 203 0.80 Mbp
30 403 0.57 Mbp 403 0.57 Mbp
40 694 378.74 Kbp 694 378.74 Kbp
50 1175 200.40 Kbp 1175 200.40 Kbp
60 2191 83.17 Kbp 2191 83.17 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.699x 5693 0.94 Gbp 5693 0.94 Gbp
NG based on genome size 1.34 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
kcLamFluv1.MT.20231107.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.