Electrona carlsbergi

Electron subantarctic

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fEleCar
  name: Electrona carlsbergi
  taxon_id: 123328
  common_name: Electron subantarctic
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fEleCar1
      biosample_id: SAMEA12815493
      sex: female
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fEleCar1 38.50 Gbp 20.19x 97.8 GiB
Arima fEleCar1 128.71 Gbp 67.49x 39.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 23 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEleCar1 PacBio HiFi (.bam) 38.50 Gbp 20.19x 97.8 GiB
Arima 128.71 Gbp 67.49x 39.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 23 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 23 June 2023
fEleCar1.pri.asm.20230623.fasta.gz (343.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 53 2.83 Mbp 3 59.80 Mbp
20 134 1.98 Mbp 6 56.42 Mbp
30 246 1.47 Mbp 10 55.49 Mbp
40 399 1.06 Mbp 13 52.46 Mbp
50 617 0.72 Mbp 17 45.82 Mbp
60 975 387.77 Kbp 21 42.46 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.688x 2372 1.31 Gbp 600 1.31 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 23 June 2023
fEleCar1.alt.asm.20230623.fasta.gz (298.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 130 1.04 Mbp 130 1.04 Mbp
20 365 0.67 Mbp 365 0.67 Mbp
30 721 427.82 Kbp 721 427.82 Kbp
40 1286 263.78 Kbp 1286 263.78 Kbp
50 2276 140.49 Kbp 2276 140.49 Kbp
60 4751 38.75 Kbp 4751 38.75 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.643x 8237 1.23 Gbp 8237 1.23 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 June 2023
fEleCar1.MT.20230623.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.