Coregonus lavaretus

common whitefish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCorLav
  name: Coregonus lavaretus
  taxon_id: 59291
  common_name: common whitefish
  order:
    name: Salmoniformes
  family:
    name: Salmonidae
  individuals:
    - short_name: fCorLav1
      biosample_id: SAMEA111528661
      sex: male
  genome_size: 3041580000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 3.0 Apple2000 (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCorLav1 106.44 Gbp 35.00x 117.9 GiB
Arima fCorLav1 383.02 Gbp 125.93x 120.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.04 Gbp.
Last upload on 12 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCorLav1 PacBio HiFi (.bam) 106.44 Gbp 35.00x 117.9 GiB
Arima 383.02 Gbp 125.93x 120.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.04 Gbp.
Last upload on 12 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 15 March 2024
fCorLav1.hap1.asm.20240315.fasta.gz (636.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 108 2.10 Mbp 3 77.28 Mbp
20 291 1.37 Mbp 8 53.26 Mbp
30 558 0.94 Mbp 15 43.52 Mbp
40 955 0.64 Mbp 22 39.30 Mbp
50 1542 427.20 Kbp 32 26.75 Mbp
60 2438 271.78 Kbp 86 1.65 Mbp
70 3928 155.38 Kbp 581 322.20 Kbp
80 6787 70.08 Kbp 2988 70.24 Kbp
90 0 0
100 0 0
0.883x 15118 2.69 Gbp 11330 2.69 Gbp
NG based on genome size 3.04 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 15 March 2024
fCorLav1.hap2.asm.20240315.fasta.gz (600.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 110 2.05 Mbp 3 87.37 Mbp
20 298 1.33 Mbp 8 61.41 Mbp
30 577 0.90 Mbp 13 52.96 Mbp
40 982 0.63 Mbp 19 48.38 Mbp
50 1590 406.52 Kbp 26 40.32 Mbp
60 2543 253.57 Kbp 34 31.19 Mbp
70 4121 144.23 Kbp 124 0.90 Mbp
80 7564 49.47 Kbp 1348 85.03 Kbp
90 0 0
100 0 0
0.825x 10719 2.51 Gbp 4015 2.51 Gbp
NG based on genome size 3.04 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 March 2024
fCorLav1.MT.20240315.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.