Clangula hyemalis

long-tailed duck

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bClaHye
  name: Clangula hyemalis
  taxon_id: 197941
  common_name: long-tailed duck
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bClaHye2
      biosample_id: SAMEA112468035
      sex: male
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bClaHye2 52.62 Gbp 38.16x 30.9 GiB
Arima bClaHye2 54.32 Gbp 39.39x 16.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bClaHye2 PacBio HiFi (.bam) 52.62 Gbp 38.16x 30.9 GiB
Arima 54.32 Gbp 39.39x 16.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_cambridge from 7 November 2023
bClaHye2.pri.asm.20231107.fasta.gz (344.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 8.69 Mbp 1 207.63 Mbp
20 32 6.67 Mbp 2 158.76 Mbp
30 56 5.13 Mbp 3 121.13 Mbp
40 87 4.14 Mbp 4 85.19 Mbp
50 125 3.25 Mbp 6 65.83 Mbp
60 172 2.54 Mbp 9 33.21 Mbp
70 236 1.78 Mbp 15 21.11 Mbp
80 338 0.99 Mbp 27 6.71 Mbp
90 0 0
100 0 0
0.875x 816 1.21 Gbp 312 1.21 Gbp
NG based on genome size 1.38 Gbp.
Individual 2 Alternate Assembly
Version assembly_cambridge from 7 November 2023
bClaHye2.alt.asm.20231107.fasta.gz (227.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 29 3.83 Mbp 29 3.83 Mbp
20 77 2.33 Mbp 77 2.33 Mbp
30 147 1.64 Mbp 147 1.64 Mbp
40 247 1.12 Mbp 247 1.12 Mbp
50 413 0.60 Mbp 413 0.60 Mbp
60 947 69.11 Kbp 947 69.11 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.618x 1865 0.85 Gbp 1865 0.85 Gbp
NG based on genome size 1.38 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bClaHye2.MT.20231107.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.