Ciliata mustela

fivebeard rockling

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCilMus
  name: Ciliata mustela
  taxon_id: 348443
  common_name: fivebeard rockling
  order:
    name: Gadiformes
  family:
    name: Lotidae
  individuals:
    - short_name: fCilMus1
      biosample_id: SAMEA12231779
      sex:
  genome_size: 645480000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 2.0 Massimiliano Marcelli (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCilMus1 20.62 Gbp 31.95x 69.9 GiB
Arima fCilMus1 150.06 Gbp 232.48x 47.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.65 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCilMus1 PacBio HiFi (.bam) 20.62 Gbp 31.95x 69.9 GiB
Arima 150.06 Gbp 232.48x 47.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.65 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 28 November 2023
fCilMus1.pri.asm.20231128.fasta.gz (121.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 103 407.70 Kbp 2 34.88 Mbp
20 315 240.46 Kbp 4 31.89 Mbp
30 656 153.66 Kbp 6 29.68 Mbp
40 1169 104.54 Kbp 9 21.03 Mbp
50 1933 68.93 Kbp 12 13.12 Mbp
60 3179 38.54 Kbp 66 284.35 Kbp
70 5832 13.46 Kbp 1755 13.96 Kbp
80 0 0
90 0 0
100 0 0
0.705x 6252 454.79 Mbp 2233 455.60 Mbp
NG based on genome size 0.65 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 28 November 2023
fCilMus1.alt.asm.20231128.fasta.gz (93.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 301 132.01 Kbp 301 132.01 Kbp
20 965 77.27 Kbp 965 77.27 Kbp
30 2008 50.25 Kbp 2008 50.25 Kbp
40 3617 32.31 Kbp 3617 32.31 Kbp
50 6203 19.38 Kbp 6203 19.38 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.574x 9414 370.20 Mbp 9414 370.20 Mbp
NG based on genome size 0.65 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 28 November 2023
fCilMus1.MT.20231128.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.