Bucephala clangula
common goldeneye
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bBucCla1 | 56.36 Gbp | 40.87x | 34.0 GiB | |
Arima | bBucCla1 | 54.50 Gbp | 39.52x | 16.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bBucCla1 | PacBio HiFi (.bam) | 56.36 Gbp | 40.87x | 34.0 GiB | |
Arima | 54.50 Gbp | 39.52x | 16.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 7 November 2023
bBucCla1.pri.asm.20231107.fasta.gz (346.2 MiB)
Quality: not computed
Version assembly_cambridge from 7 November 2023
bBucCla1.pri.asm.20231107.fasta.gz (346.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 9.95 Mbp | 2 | 120.46 Mbp |
20 | 29 | 7.18 Mbp | 3 | 93.89 Mbp |
30 | 50 | 5.95 Mbp | 4 | 88.95 Mbp |
40 | 75 | 4.77 Mbp | 6 | 73.82 Mbp |
50 | 108 | 3.75 Mbp | 8 | 65.89 Mbp |
60 | 150 | 2.90 Mbp | 11 | 33.35 Mbp |
70 | 209 | 1.84 Mbp | 17 | 21.58 Mbp |
80 | 322 | 0.70 Mbp | 29 | 6.01 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.864x | 987 | 1.19 Gbp | 569 | 1.19 Gbp |
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 7 November 2023
bBucCla1.alt.asm.20231107.fasta.gz (261.0 MiB)
Quality: not computed
Version assembly_cambridge from 7 November 2023
bBucCla1.alt.asm.20231107.fasta.gz (261.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 25 | 4.03 Mbp | 25 | 4.03 Mbp |
20 | 68 | 2.74 Mbp | 68 | 2.74 Mbp |
30 | 127 | 1.88 Mbp | 127 | 1.88 Mbp |
40 | 220 | 1.19 Mbp | 220 | 1.19 Mbp |
50 | 364 | 0.74 Mbp | 364 | 0.74 Mbp |
60 | 679 | 228.87 Kbp | 679 | 228.87 Kbp |
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.700x | 4143 | 0.96 Gbp | 4143 | 0.96 Gbp |
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bBucCla1.MT.20231107.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 7 November 2023
bBucCla1.MT.20231107.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.