Branta leucopsis

barnacle goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bBraLeu
  name: Branta leucopsis
  taxon_id: 184711
  common_name: barnacle goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bBraLeu2
      biosample_id: SAMEA112468032
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Bengt Nyman (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bBraLeu1 62.56 Gbp N/A 111.9 GiB
PacBio HiFi (.bam) bBraLeu2 63.30 Gbp N/A 30.5 GiB
Bionano bBraLeu1 N/A N/A 2.7 GiB
Arima bBraLeu2 121.00 Gbp N/A 37.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bBraLeu1 PacBio CLR 62.56 Gbp N/A 111.9 GiB
Bionano N/A N/A 2.7 GiB
bBraLeu2 PacBio HiFi (.bam) 63.30 Gbp N/A 30.5 GiB
Arima 121.00 Gbp N/A 37.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 29 February 2024
bBraLeu2.hap1.asm.20240229.fasta.gz (363.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 7.15 Mbp 1 212.45 Mbp
20 35 5.48 Mbp 2 162.98 Mbp
30 64 4.14 Mbp 3 122.10 Mbp
40 100 3.35 Mbp 4 78.64 Mbp
50 143 2.81 Mbp 6 66.90 Mbp
60 196 2.17 Mbp 9 34.14 Mbp
70 268 1.57 Mbp 13 23.15 Mbp
80 375 1.03 Mbp 21 11.85 Mbp
90 549 0.55 Mbp 53 1.83 Mbp
100 1616 1.00 Kbp 892 1.00 Kbp
1.000x 1616 1.33 Gbp 892 1.33 Gbp
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 29 February 2024
bBraLeu2.hap2.asm.20240229.fasta.gz (337.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.29 Mbp 1 211.15 Mbp
20 29 5.98 Mbp 2 163.21 Mbp
30 54 4.42 Mbp 2 163.21 Mbp
40 85 3.39 Mbp 3 121.51 Mbp
50 125 2.84 Mbp 5 65.94 Mbp
60 173 2.26 Mbp 8 38.48 Mbp
70 235 1.71 Mbp 12 22.76 Mbp
80 322 1.18 Mbp 18 16.63 Mbp
90 459 0.66 Mbp 41 2.35 Mbp
100 1108 1.00 Kbp 498 1.00 Kbp
1.000x 1108 1.23 Gbp 498 1.23 Gbp
NG based on genome size .
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 February 2024
bBraLeu2.MT.20240229.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.