Aythya ferina
common pochard
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bAytFer1 | 137.31 Gbp | 101.74x | 63.8 GiB | |
Arima | bAytFer1 | 129.25 Gbp | 95.77x | 39.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bAytFer1 | PacBio HiFi (.bam) | 137.31 Gbp | 101.74x | 63.8 GiB | |
Arima | 129.25 Gbp | 95.77x | 39.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 27 February 2024
bAytFer1.hap1.asm.20240227.fasta.gz (345.3 MiB)
Quality: not computed
Version assembly_cambridge from 27 February 2024
bAytFer1.hap1.asm.20240227.fasta.gz (345.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 9.58 Mbp | 1 | 207.52 Mbp |
20 | 29 | 6.99 Mbp | 2 | 160.57 Mbp |
30 | 50 | 6.16 Mbp | 3 | 120.40 Mbp |
40 | 74 | 4.72 Mbp | 4 | 77.69 Mbp |
50 | 106 | 3.88 Mbp | 6 | 57.14 Mbp |
60 | 146 | 2.89 Mbp | 10 | 32.72 Mbp |
70 | 206 | 1.71 Mbp | 15 | 20.81 Mbp |
80 | 317 | 0.89 Mbp | 28 | 4.59 Mbp |
90 | 999 | 43.58 Kbp | 585 | 44.52 Kbp |
100 | 0 | 0 | ||
0.918x | 1884 | 1.24 Gbp | 1465 | 1.24 Gbp |
NG based on genome size 1.35 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 27 February 2024
bAytFer1.hap2.asm.20240227.fasta.gz (331.9 MiB)
Quality: not computed
Version assembly_cambridge from 27 February 2024
bAytFer1.hap2.asm.20240227.fasta.gz (331.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 8.88 Mbp | 1 | 207.39 Mbp |
20 | 29 | 7.30 Mbp | 2 | 160.81 Mbp |
30 | 51 | 5.32 Mbp | 3 | 121.05 Mbp |
40 | 78 | 4.61 Mbp | 4 | 77.20 Mbp |
50 | 113 | 3.38 Mbp | 6 | 57.38 Mbp |
60 | 158 | 2.48 Mbp | 10 | 32.54 Mbp |
70 | 225 | 1.63 Mbp | 15 | 21.33 Mbp |
80 | 338 | 0.86 Mbp | 27 | 4.64 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.866x | 880 | 1.17 Gbp | 451 | 1.17 Gbp |
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bAytFer1.MT.20240227.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 27 February 2024
bAytFer1.MT.20240227.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.