Anser brachyrhynchus
Pink-footed goose
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bAnsBra1 | 48.27 Gbp | 35.00x | 28.8 GiB | |
Arima | bAnsBra1 | 99.34 Gbp | 72.04x | 30.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bAnsBra1 | PacBio HiFi (.bam) | 48.27 Gbp | 35.00x | 28.8 GiB | |
Arima | 99.34 Gbp | 72.04x | 30.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 7 November 2023
bAnsBra1.pri.asm.20231107.fasta.gz (356.0 MiB)
Quality: not computed
Version assembly_cambridge from 7 November 2023
bAnsBra1.pri.asm.20231107.fasta.gz (356.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 18 | 5.87 Mbp | 1 | 213.09 Mbp |
20 | 47 | 4.16 Mbp | 2 | 161.66 Mbp |
30 | 85 | 3.17 Mbp | 3 | 124.28 Mbp |
40 | 136 | 2.38 Mbp | 4 | 82.52 Mbp |
50 | 201 | 1.86 Mbp | 6 | 62.55 Mbp |
60 | 290 | 1.31 Mbp | 10 | 27.28 Mbp |
70 | 417 | 0.88 Mbp | 16 | 18.23 Mbp |
80 | 621 | 0.51 Mbp | 27 | 7.60 Mbp |
90 | 1085 | 151.95 Kbp | 179 | 278.00 Kbp |
100 | 0 | 0 | ||
0.935x | 1875 | 1.29 Gbp | 788 | 1.29 Gbp |
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 7 November 2023
bAnsBra1.alt.asm.20231107.fasta.gz (293.5 MiB)
Quality: not computed
Version assembly_cambridge from 7 November 2023
bAnsBra1.alt.asm.20231107.fasta.gz (293.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 46 | 2.14 Mbp | 46 | 2.14 Mbp |
20 | 125 | 1.46 Mbp | 125 | 1.46 Mbp |
30 | 235 | 1.11 Mbp | 235 | 1.11 Mbp |
40 | 380 | 0.81 Mbp | 380 | 0.81 Mbp |
50 | 581 | 0.57 Mbp | 581 | 0.57 Mbp |
60 | 880 | 375.07 Kbp | 880 | 375.07 Kbp |
70 | 1398 | 190.07 Kbp | 1398 | 190.07 Kbp |
80 | 3068 | 35.27 Kbp | 3068 | 35.27 Kbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.840x | 5446 | 1.16 Gbp | 5446 | 1.16 Gbp |
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bAnsBra1.MT.20231107.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 7 November 2023
bAnsBra1.MT.20231107.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.